Factsheet for GSMUA_Achr11P00080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P04920_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	GSMUA_Achr3P04920_001	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g07070.t01	Wine grape	cytosol	83.86	81.06
EER91898	Sorghum	cytosol	81.41	78.47
Zm00001d030011_P001	Maize	plasma membrane	81.27	78.33
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	81.12	78.3
HORVU5Hr1G106440.1	Barley	cytosol	80.12	77.12
TraesCS5A01G442500.1	Wheat	cytosol, golgi	79.39	77.06
VIT_04s0008g07060.t01	Wine grape	mitochondrion	11.1	77.0
PGSC0003DMT400004200	Potato	cytosol	79.39	76.85
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	79.68	76.7
TraesCS5B01G446600.1	Wheat	cytosol	79.54	76.56
Solyc01g088370.2.1	Tomato	nucleus, plastid	78.82	76.29
HORVU4Hr1G014100.3	Barley	cytosol	79.25	76.28
KRH64883	Soybean	endoplasmic reticulum	78.39	75.77
KRH48727	Soybean	endoplasmic reticulum	78.24	75.63
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	78.1	75.17
TraesCS4A01G232600.1	Wheat	cytosol	77.38	74.48
TraesCS4B01G083200.1	Wheat	cytosol	75.65	74.47
TraesCS6B01G307400.1	Wheat	cytosol	73.63	74.27
CDY34755	Canola	cytosol	73.92	71.85
CDX76792	Canola	cytosol	73.78	71.71
Bra007832.1-P	Field mustard	cytosol	73.78	71.71
CDY45599	Canola	cytosol	73.78	71.71
Bra032059.1-P	Field mustard	cytosol	73.78	71.71
KRH61614	Soybean	endoplasmic reticulum	61.24	71.43
CDY36167	Canola	cytosol	73.49	71.43
AT5G25780.1	Thale cress	cytosol	72.19	70.17
AT5G27640.2	Thale cress	cytosol	74.21	69.78
TraesCS6D01G406100.1	Wheat	cytosol	39.19	59.26
AT1G49015.1	Thale cress	cytosol	16.86	51.54
CDX94125	Canola	endoplasmic reticulum, golgi	18.88	37.86
Bra009732.1-P	Field mustard	cytosol	27.38	37.48
CDX88073	Canola	cytosol	27.38	37.48
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	47.84	37.39
CDX80412	Canola	cytosol	26.95	37.03
CDY66663	Canola	mitochondrion	7.93	31.07
GSMUA_Achr6P28750_001	Banana	nucleus	12.82	17.08
KRH66844	Soybean	cytosol	1.87	16.67

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	ncoils:Coil	InterPro:EIF3B	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:GSMUA_Achr11G00080_001	EnsemblPlants:GSMUA_Achr11P00080_001	EnsemblPlants:GSMUA_Achr11T00080_001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR015943	UniProt:M0RN39	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI000294AC58	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:eIF3B_RRM	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit B [Source:GMGC_GENE;Acc:GSMUA_Achr11G00080_001]

Coordinates

chr11:-:30058..35889

Molecular Weight (calculated)

79976.4 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.543

Length

694 amino acids

Sequence
(BLAST)

001: MAEVVLIEDI EASATRLGID LSSVDLDSIQ LPRGEDFGIK SDDDDDLYQE DPLEFEAGFG NIIVVDNLPV VPPEKFEKLE GVIRKIYSQI GTIREGGIWM
101: PVNPDTQKTL GYCFIEYNTP QEAELAREKT NGYKLDKSHI FAVNLFDDFE KYMKVPDEWK AAEIKPYTPG ENLQQWLTDE KARDQFVIRA GSNTEVFWND
201: PRQLMPELVH QRQYWTESFV QWSPLGTYLA TVHRQGAAVW GGATTFNRLM RFAHPQVRLI DFSPGEKYLV TFSSHEPSNP RDTHRIVINI FDVRTGKLMR
301: DFKGNVDEFA TGGSGGVSGI SWPVFRWGGG KEDKYFARMG KNVISVYETE TFTLIDKKSM KVENVVDFSW SPTDPILALF VPELGGGNQP ARVSLVQIPG
401: KEELRQKNLF SVSDCKMYWQ NNGEYLAVKV DRYTKTKKST YTGFELFRIK ERDIPIEVLE LDNKNDKIVA FAWEPKGHRF AVIHGDGPRP DISFYSMRTT
501: LNIGRVSKLT TLKAKQANAL YWSPAGRYIV LAGLKGFNGQ LEFYNVDELE TMATGEHFMA TDIEWDPTGR YVATAVTSVH EMENGFHIWS FSGKLLYRIS
601: RDHFYQFEWR PRPPSLLSAE KEEEIAKNLK KYSKKYEAED QDVSMQLNEQ DRRKRKMLQE QWNEWEEEYE AKEVEVEEVL DITEEVVAFD LDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.