Factsheet for VIT_04s0008g07070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004200	Potato	cytosol	85.24	85.36
Solyc01g088370.2.1	Tomato	nucleus, plastid	84.82	84.94
VIT_04s0008g07060.t01	Wine grape	mitochondrion	11.7	84.0
GSMUA_Achr11P...	Banana	cytosol	81.06	83.86
EER91898	Sorghum	cytosol	80.22	80.0
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	78.97	78.86
Zm00001d030011_P001	Maize	plasma membrane	78.55	78.33
TraesCS5A01G442500.1	Wheat	cytosol, golgi	77.86	78.18
HORVU5Hr1G106440.1	Barley	cytosol	78.41	78.09
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	78.41	78.09
TraesCS5B01G446600.1	Wheat	cytosol	78.13	77.81
HORVU4Hr1G014100.3	Barley	cytosol	77.44	77.12
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	76.6	76.28
TraesCS4A01G232600.1	Wheat	cytosol	76.32	76.01
TraesCS4B01G083200.1	Wheat	cytosol	74.23	75.6
TraesCS6B01G307400.1	Wheat	cytosol	71.87	75.0
TraesCS6D01G406100.1	Wheat	cytosol	36.63	57.3
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	45.68	36.94
VIT_05s0094g00460.t01	Wine grape	nucleus	13.37	16.64

Protein Annotations

EntrezGene:100244090	wikigene:100244090	MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EMBL:AM456082
ProteinID:CAN76773	ProteinID:CAN76773.1	ProteinID:CBI21174	ProteinID:CBI21174.3	ncoils:Coil	UniProt:D7SV75
InterPro:EIF3B	EMBL:FN595231	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR015943	EntrezGene:LOC100244090	wikigene:LOC100244090	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	TIGR:TC55127	InterPro:TIF_beta_prop-like
UniParc:UPI0001983025	ArrayExpress:VIT_04s0008g07070	EnsemblPlantsGene:VIT_04s0008g07070	EnsemblPlants:VIT_04s0008g07070.t01	unigene:Vvi.2906	InterPro:WD40/YVTN_repeat-like_dom_sf
RefSeq:XP_002285591	RefSeq:XP_002285591.1	InterPro:eIF3B_RRM	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:D7SV75]

Coordinates

chr4:+:7178916..7187911

Molecular Weight (calculated)

82765.3 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.596

Length

718 amino acids

Sequence
(BLAST)

001: MAEVISMEDI RATASTLGID VSNIDFDSIR LPPGEDFGIT SDDDLHEEDP LEYDSGFGNI IVVDNLPVVP REKFEKLEGV VRKIYSQIGV IKEDGLWMPV
101: DSDTQKTLGY CFIEYNTPQE AELAREKTNG YKLDRAHIFA VNMFDDFDRF MKVPDEWAPP ETKPYTPGEN LQHWLTDEKA RDQFVIRAGS DTEVLWNDAR
201: HLKPEPVYKR AYWTESFVQW SPLGTYLATV HRQGAAVWGG ATAFNRLMRY AHPQVKLIDF SPGEKYLVTY SSHEPSNPRD THRVVLNVFD VRTGKVMRDF
301: KGSMDEFSVG GAGGVSGVSW PVFRWGGGKE DKYFARIGKN VISVYETETF SLIDKKSLKV ENVMDLSWSP ADPILALFVP ELGGGNQPAR VSLVQIPSKE
401: ELRQKNLFSV SDCKMYWQSN GDYLAVKVDR YTKTKKSTYT GFELFRIKER DIPIEVLELE NKNDKIIAFA WEPKGHRFAV IHGDSPRPDV SFYTMRSGSN
501: TGRVSKLTTL KGKQANALFW SPAGRYIILA GLKGFNGQLE FYNVDELETM ATAEHFMATD IEWDPTGRYV ATSVTSVHEM ENGFNIWSFN GKLLYRILKD
601: HFFQFLWRPR PPSFLSPEKE EEIAKNLKKY SKKYEAEDQD VSMLLSEQDR EKRKMLKDEW ERWVNDWKRW HEEEKAERQR LRDGEASDEE EEYEAKEVEV
701: EELLDVSEEV LSFDLDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.