Factsheet for TraesCS5A01G442500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	99.58	98.75
TraesCS5B01G446600.1	Wheat	cytosol	99.58	98.75
HORVU5Hr1G106440.1	Barley	cytosol	98.74	97.92
TraesCS4A01G232600.1	Wheat	cytosol	93.01	92.23
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.29	85.81
EER91898	Sorghum	cytosol	86.29	85.69
Zm00001d030011_P001	Maize	plasma membrane	85.73	85.14
GSMUA_Achr11P...	Banana	cytosol	77.06	79.39
VIT_04s0008g07070.t01	Wine grape	cytosol	78.18	77.86
KRH48727	Soybean	endoplasmic reticulum	75.52	75.21
PGSC0003DMT400004200	Potato	cytosol	75.24	75.03
KRH64883	Soybean	endoplasmic reticulum	75.24	74.93
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.69	74.48
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.07	72.0
KRH61614	Soybean	endoplasmic reticulum	59.58	71.6
CDY34755	Canola	cytosol	70.21	70.31
Bra007832.1-P	Field mustard	cytosol	70.07	70.17
AT5G25780.1	Thale cress	cytosol	69.93	70.03
CDX76792	Canola	cytosol	69.93	70.03
Bra032059.1-P	Field mustard	cytosol	69.51	69.61
CDY45599	Canola	cytosol	69.51	69.61
CDY36167	Canola	cytosol	69.37	69.47
AT5G27640.2	Thale cress	cytosol	70.91	68.7
AT1G49015.1	Thale cress	cytosol	16.08	50.66
Bra009732.1-P	Field mustard	cytosol	26.01	36.69
CDX88073	Canola	cytosol	26.01	36.69
CDX80412	Canola	cytosol	25.59	36.24
CDX94125	Canola	endoplasmic reticulum, golgi	17.48	36.13
CDY66663	Canola	mitochondrion	8.81	35.59
TraesCS6A01G216300.2	Wheat	nucleus	11.89	16.47
KRH66844	Soybean	cytosol	1.68	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS5A01G442500	EnsemblPlants:TraesCS5A01G442500.1
InterPro:WD40/YVTN_repeat-like_dom_sf	TIGR:cd12278	InterPro:eIF3B_RRM	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:+:622986202..622990718

Molecular Weight (calculated)

82700.5 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.603

Length

715 amino acids

Sequence
(BLAST)

001: MEAIDARARE LGIDLDSVDV DSITLPPGED FDILSDDEDL LQNEDIPELE MGFSNIIVVD NLPVVPPEKY EKLENVVRKI YSQIGVIKEG GLWMPTHPET
101: KKTYGYCFIE YNTPQEAELA REKTNGYKLD KSHIFAVNMF DDFEKYMKVP DEWAPAEIKP YTPGENLLKW LTDDKARDQF VIRAGTFTEV YWNDARRAMP
201: ELVYQKQYWT DSYIQWSPLG THLATVHRQG AQVWGGDDKF VRLMRFAHPQ VKLIDFSPGE KYLITYSSQE PSNPRDTHRV VLNIFDVRTG KVMRDFKGSA
301: DDFTTGGNMG VSGVSWPIFR WGGGRDDKYF ARLGKNVISV YETDTFSLID KKSLKVENVV DFSWSPSDPI ISLFVPELGG GNQPARVSLV QIPGKEEIRQ
401: KNLFSVSDCK MYWQNNGEYL AVQVDRYTKT KKSIYTGFEL FRIKERDIPI EVFELENKND KIIAFAWEPK GHRFAVIHGD GPKPDISFYT MKAVNNNVSR
501: VSKLTTLKGK QANALFWSPA GRFIVLAGLK GFNGQLEFFN VDDLETMATG EHFMATDIMW DPTGRFLATA VTSVHEMENG FQIWSFNGKL IYKISKDHFY
601: QFQWRPRPPS LLTPEKEEDI SKNLKRYSKK YEQEDLDVSN QVGEQERKRR TQLQEEWQGW VAKWKQLHEE ERSYRMELRG GEESDKEEEA EYKEIEAEEL
701: VDVTEEIVAF DLDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.