Factsheet for TraesCS5D01G416000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G188800.1
TraesCS1A01G227600.1
TraesCS1B01G196500.2
TraesCS1B01G241900.3
TraesCS1D01G187600.1
TraesCS1D01G229300.1
TraesCS2A01G301900.1
TraesCS2D01G300400.2
TraesCS4A01G232600.1
TraesCS4B01G083200.1
TraesCS4B01G356500.1
TraesCS4D01G081300.1
TraesCS4D01G350200.1
TraesCS5A01G261900.1
TraesCS5A01G442500.1
TraesCS5A01G525900.1
TraesCS5B01G260000.2
TraesCS5B01G446600.1
TraesCS5D01G238500.1
TraesCS5D01G269200.1
TraesCS5D01G449900.2
TraesCS6B01G307400.1
TraesCS6D01G406100.1
TraesCS7B01G257700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	TraesCS1A01G227600.1	AT1G50030.1	23524850
AT3G56150.1	TraesCS1B01G241900.3	AT1G50030.1	23524850
AT3G56150.1	TraesCS1D01G229300.1	AT1G50030.1	23524850
AT3G56150.1	TraesCS5A01G261900.1	AT3G57290.1	11029466
AT3G56150.1	TraesCS5B01G260000.2	AT3G57290.1	11029466
AT3G56150.1	TraesCS5D01G269200.1	AT3G57290.1	11029466
AT3G56150.1	TraesCS1A01G188800.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS1B01G196500.2	AT3G61140.1	11029466
AT3G56150.1	TraesCS1D01G187600.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS4B01G356500.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS4D01G350200.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS5A01G525900.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS5D01G238500.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS7B01G257700.1	AT3G61140.1	11029466
AT3G56150.1	TraesCS2A01G301900.1	AT4G14110.1	11029466
AT3G56150.1	TraesCS2D01G300400.2	AT4G14110.1	11029466
AT3G56150.1	TraesCS4A01G232600.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS4B01G083200.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS4D01G081300.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5A01G442500.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5B01G446600.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS5D01G449900.2	AT5G25780.1	11029466
AT3G56150.1	TraesCS6B01G307400.1	AT5G25780.1	11029466
AT3G56150.1	TraesCS6D01G406100.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G410800.1	Wheat	cytosol	96.22	96.12
TraesCS5A01G406000.1	Wheat	cytosol	95.15	95.56
HORVU5Hr1G098600.1	Barley	cytosol	93.1	93.1
TraesCS5D01G228100.1	Wheat	golgi, unclear	87.49	87.39
Os07t0124500-01	Rice	nucleus	81.77	80.98
KXG35906	Sorghum	cytosol	80.04	79.53
Zm00001d002169_P006	Maize	cytosol	78.96	78.71
Zm00001d002166_P004	Maize	cytosol	78.64	78.39
Zm00001d020935_P002	Maize	cytosol	66.34	74.73
Zm00001d002737_P002	Maize	vacuole	74.87	71.62
GSMUA_Achr3P04920_001	Banana	cytosol	65.91	68.5
VIT_16s0039g01140.t01	Wine grape	cytosol	5.93	66.27
VIT_08s0007g07180.t01	Wine grape	cytosol	66.13	64.8
CDY65406	Canola	cytosol	56.74	64.62
CDY16358	Canola	cytosol	57.82	64.27
CDX72169	Canola	cytosol	57.71	64.15
KRH41811	Soybean	cytosol	63.0	63.07
KRH68073	Soybean	endoplasmic reticulum	63.0	63.07
KRH60516	Soybean	endoplasmic reticulum	62.57	62.7
PGSC0003DMT400078176	Potato	cytosol	61.7	62.58
CDY27241	Canola	cytosol	58.47	62.51
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	60.95	62.5
AT3G56150.1	Thale cress	cytosol	60.52	62.33
Bra007220.1-P	Field mustard	cytosol	60.09	62.23
Bra022520.1-P	Field mustard	cytosol	57.93	62.08
PGSC0003DMT400046928	Potato	cytosol	61.16	61.5
Solyc01g102570.2.1	Tomato	cytosol, nucleus	23.19	60.39
Solyc01g102600.2.1	Tomato	cytosol	23.09	59.94
Solyc01g102560.2.1	Tomato	nucleus	19.85	59.35
CDY06037	Canola	cytosol	46.71	59.32
CDX71953	Canola	cytosol	50.49	57.07
Bra007396.1-P	Field mustard	cytosol, mitochondrion	50.81	57.02
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.78	55.56
AT3G22860.1	Thale cress	cytosol	47.68	54.91
Solyc01g102590.2.1	Tomato	nucleus	22.22	50.24

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0031369	InterPro:IPR000717	InterPro:IPR036388	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:TraesCS5D01G416000	EnsemblPlants:TraesCS5D01G416000.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:478465979..478469333

Molecular Weight (calculated)

104908.0 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.687

Length

927 amino acids

Sequence
(BLAST)

001: MASRFWGQGD SDSEEEVDEI ESEQGSDSEK SEAGDGGRDG SKNRYLNSDD SDDSDTESHR VIRSLKDKRN DEMKATADQM RNAMKINDWI SLQESFDKLN
101: KQLEKVVRVN ESTKIPNRYI TTLVLLEDFL AEALANKEAK TKMSSSNSKA HNAVRQKLKK NNKQYEDLIQ KCRDNPESFE DHIADKVSDD DSGDDGSDVD
201: IVDPEPDPDD SSDDNKSELG GAWEKKLSKK DEIMDKQFLK DPSEITWDIV DKKLKEIVAS RGKKGTGRIE RVEQLTFLTR VAKTPAQKLE IIFHVISAQF
301: DVNPSLLGHM PINVWKKCVD NMLLVLDILQ QYPNIVVDTS VEPDEKETQK GAAYDGMIHV TGDLVAFLER IDSEFFKSLQ CSDPYTKDYV QRLRDEPLFL
401: VVAQNVQDYQ ERVQNFKAAA KVALRRVELV YYKPQEVYDA MRKLAEQTEL SMDDGDTEAG EEHQEADDNR GPPPFVVIPE VVPRKPTFPP SNRALMDDLM
501: SLIYKHGDER TKARAMLCQI YHYAISDEFS VARDLILMSR LQDGVQLMDI SSQILYNRVM AQLGLCAFRA GYIAEAHGCL SELYSFGRVK ELLAQGVQHS
601: RYHDKTPEQE RLERRRMMPY HMHINLELLE ATHLVCAMLI EVPNMAASAF DKRRPMSKTF RRLLEISERQ TFVGPPETVR DHVLAATRAL SKGDYEKAFS
701: VIRSLDTWKL LRNKEHILEM LKLKIKEEAL RTYLFSYSSC YESLSLDQLT TMFDLSEKQA HSIVSKMMMH EELHASWDQP TNCIIFQNVD QTRLQGLFFQ
801: MADRLSVLVE SNERAYEART GGALEGAPPR RRGGDGQDSY GLGKWQENFV SSQGRRGGGR SGYAGRTGGS GRGGGYQNDM FQSDRSGQGS RGGYGGGGSR
901: FHDGRARSQS GMSSRGDGGA RLVSLSR

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.