Factsheet for VIT_16s0039g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0088g00450.t01
VIT_04s0008g07060.t01
VIT_12s0055g00390.t01
VIT_15s0048g01980.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	VIT_03s0088g00450.t01	AT1G50030.1	23524850
AT3G56150.1	VIT_15s0048g01980.t01	AT3G61140.1	11029466
AT3G56150.1	VIT_12s0055g00390.t01	AT4G14110.1	11029466
AT3G56150.1	VIT_04s0008g07060.t01	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0109g00320.t01	Wine grape	cytosol	15.66	100.0
Solyc01g102570.2.1	Tomato	cytosol, nucleus	79.52	18.54
Solyc01g102600.2.1	Tomato	cytosol	79.52	18.49
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	13.25	17.46
VIT_08s0007g07180.t01	Wine grape	cytosol	90.36	7.93
KRH60516	Soybean	endoplasmic reticulum	85.54	7.68
GSMUA_Achr3P04920_001	Banana	cytosol	81.93	7.62
KRH41811	Soybean	cytosol	84.34	7.56
KRH68073	Soybean	endoplasmic reticulum	83.13	7.45
CDX72169	Canola	cytosol	72.29	7.19
PGSC0003DMT400046928	Potato	cytosol	79.52	7.16
CDY65406	Canola	cytosol	69.88	7.13
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	77.11	7.08
CDY16358	Canola	cytosol	71.08	7.07
AT3G56150.1	Thale cress	cytosol	75.9	7.0
CDY27241	Canola	cytosol	72.29	6.92
PGSC0003DMT400078176	Potato	cytosol	75.9	6.89
CDY06037	Canola	cytosol	60.24	6.85
Zm00001d020935_P002	Maize	cytosol	67.47	6.8
Bra022520.1-P	Field mustard	cytosol	69.88	6.71
Bra007220.1-P	Field mustard	cytosol	72.29	6.7
KXG35906	Sorghum	cytosol	72.29	6.43
Os07t0124500-01	Rice	nucleus	71.08	6.3
CDX71953	Canola	cytosol	61.45	6.22
HORVU5Hr1G063770.2	Barley	nucleus	68.67	6.15
TraesCS5A01G220000.1	Wheat	nucleus	68.67	6.14
TraesCS5B01G219100.1	Wheat	nucleus	68.67	6.14
TraesCS5B01G410800.1	Wheat	cytosol	68.67	6.14
TraesCS5D01G228100.1	Wheat	golgi, unclear	68.67	6.14
Zm00001d002169_P006	Maize	cytosol	68.67	6.13
Zm00001d002166_P004	Maize	cytosol	68.67	6.13
TraesCS5A01G406000.1	Wheat	cytosol	67.47	6.07
Bra007396.1-P	Field mustard	cytosol, mitochondrion	60.24	6.05
TraesCS5D01G416000.1	Wheat	cytosol	66.27	5.93
HORVU5Hr1G098600.1	Barley	cytosol	65.06	5.83
EES13928	Sorghum	cytosol	62.65	5.81
Zm00001d002737_P002	Maize	vacuole	67.47	5.78
AT3G22860.1	Thale cress	cytosol	51.81	5.34
Solyc01g102590.2.1	Tomato	nucleus	7.23	1.46
HORVU2Hr1G058370.1	Barley	cytosol	2.41	1.1
Solyc01g102560.2.1	Tomato	nucleus	0.0	0.0
HORVU2Hr1G058390.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CBI26449	ProteinID:CBI26449.3	UniProt:D7T7H8	InterPro:EIF3C_N_dom	EMBL:FN595750
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0031369	PFAM:PF05470	PANTHER:PTHR13937	UniParc:UPI0001BE29D2	ArrayExpress:VIT_16s0039g01140
EnsemblPlantsGene:VIT_16s0039g01140	EnsemblPlants:VIT_16s0039g01140.t01	:	:	:	:

Description

No Description!

Coordinates

chr16:+:627302..627808

Molecular Weight (calculated)

9437.5 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.500

Length

83 amino acids

Sequence
(BLAST)

1: MSTTIDQTKN AMKINDWVSL QESFDKINKQ PEKVMRVIES DKVPTLYIKA LVMLEDFLSR ALANKDAKKK MSSSNAQALN SMK

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.