Factsheet for Bra007220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003438.1-P
Bra007317.1-P
Bra007576.1-P
Bra007832.1-P
Bra014633.1-P
Bra018828.1-P
Bra032059.1-P
Bra032760.1-P
Bra038444.1-P
Bra039647.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Bra018828.1-P	AT1G50030.1	23524850
AT3G56150.1	Bra039647.1-P	AT1G50030.1	23524850
AT3G56150.1	Bra007317.1-P	AT3G57290.1	11029466
AT3G56150.1	Bra014633.1-P	AT3G57290.1	11029466
AT3G56150.1	Bra003438.1-P	AT3G61140.1	11029466
AT3G56150.1	Bra007576.1-P	AT3G61140.1	11029466
AT3G56150.1	Bra032760.1-P	AT4G14110.1	11029466
AT3G56150.1	Bra038444.1-P	AT4G14110.1	11029466
AT3G56150.1	Bra007832.1-P	AT5G25780.1	11029466
AT3G56150.1	Bra032059.1-P	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27241	Canola	cytosol	95.31	98.39
Bra022520.1-P	Field mustard	cytosol	92.96	96.19
AT3G56150.1	Thale cress	cytosol	84.69	84.22
VIT_16s0039g01140.t01	Wine grape	cytosol	6.7	72.29
Bra007396.1-P	Field mustard	cytosol, mitochondrion	64.8	70.22
AT3G22860.1	Thale cress	cytosol	62.68	69.69
KRH60516	Soybean	endoplasmic reticulum	68.49	66.27
PGSC0003DMT400046928	Potato	cytosol	68.27	66.27
KRH68073	Soybean	endoplasmic reticulum	68.49	66.2
KRH41811	Soybean	cytosol	68.16	65.87
PGSC0003DMT400078176	Potato	cytosol	67.26	65.86
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	66.26	65.6
Solyc01g102560.2.1	Tomato	nucleus	22.23	64.19
GSMUA_Achr3P04920_001	Banana	cytosol	62.57	62.78
Solyc01g102600.2.1	Tomato	cytosol	24.8	62.18
Solyc01g102570.2.1	Tomato	cytosol, nucleus	24.69	62.08
Os07t0124500-01	Rice	nucleus	64.02	61.22
KXG35906	Sorghum	cytosol	63.46	60.88
Zm00001d002169_P006	Maize	cytosol	63.13	60.75
Zm00001d002166_P004	Maize	cytosol	63.13	60.75
TraesCS5A01G220000.1	Wheat	nucleus	62.57	60.34
TraesCS5D01G228100.1	Wheat	golgi, unclear	62.57	60.34
TraesCS5B01G219100.1	Wheat	nucleus	62.46	60.24
TraesCS5D01G416000.1	Wheat	cytosol	62.23	60.09
HORVU5Hr1G063770.2	Barley	nucleus	62.23	60.09
TraesCS5B01G410800.1	Wheat	cytosol	62.01	59.81
Zm00001d020935_P002	Maize	cytosol	54.86	59.66
TraesCS5A01G406000.1	Wheat	cytosol	61.23	59.37
HORVU5Hr1G098600.1	Barley	cytosol	61.12	59.01
HORVU2Hr1G058390.1	Barley	cytosol	10.61	58.28
Zm00001d002737_P002	Maize	vacuole	60.34	55.73
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.91	55.56
HORVU2Hr1G058370.1	Barley	cytosol	11.17	54.95
EES13928	Sorghum	cytosol	53.74	53.74
Solyc01g102590.2.1	Tomato	nucleus	24.58	53.66

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	EnsemblPlantsGene:Bra007220	EnsemblPlants:Bra007220.1	EnsemblPlants:Bra007220.1-P	ncoils:Coil
InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717
InterPro:IPR036388	UniProt:M4CSM8	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470
PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002542B1D
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT3G56150 (E=0.0) EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1 | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C); translation initiation factor

Coordinates

chrA09:-:28051161..28054237

Molecular Weight (calculated)

102746.0 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.718

Length

895 amino acids

Sequence
(BLAST)

001: MSRFFAQGGS DSEDESDIEE EIQEVQNNDI NNRYLQDNSD DDDDTDTKRV IKPTKDKRFE EMTHTVEQMK NAMKINDWVS LQENFDKVNK QLEKVMRITE
101: AVKPPTLYIK TLVMLEDFLN EALANKEAKK KMSPSNSKAL NAMRQKLKKN NKLHEEEINK YREAPEVEEE NEPEDEDDDD EEDEDEEDDD SKEAVTDEEV
201: DETTDTRWET MLNKKDKQME KLLSKDPKEI TWDWVNQKFK EIMAARGRKG TARFDLVDQL THLTKIAKTP AQKLEILFSV ISAQFDVNPG LSGHMPIKVW
301: KKCVLNMLTI LDILVKYTNI VVDDTIEPEE NETSKPADYD GTIRVWGNLV AFIERIDTEF FKSLQSIDPH TREYVERLRD EPMFLALAQN IQDYFERMGD
401: FKAAAKVALR RVESIYYKPQ EVYEAMRKLA ELVEEEEEAE DAEEESGPIS SFIVVPEVVP RKPTFPESGR AMMDLLVSLI YRNGDERTKA RAMLCDIYHH
501: ALMDNFGTAR DLLLMSHLQD NIQHMDISTQ ILFNRTMAQL GLCAFRVGMI TESHSCLSEL YSGQRVRELL AQGVSQSRYH EKTPEQERME RRRQMPYHMH
601: INLELLEAVH LIGAMLLEVP NMAANSLEAR RRVISKNFRR LLEISERQAF NAPPENVRDH VMAATRALTK GDFQTAFEVL NSLEVWRMLK NRDSILEMVK
701: ARIKEEALRT YLFTYSSSYE SLSLEQLAKM FDVTEAQVHS IVSKMMINEE LHASWDQPTR CIVFHEVQHS RLQSLAFQLT EKLSVLAESN ERAMEARTGG
801: GGLDLSSRRR DNNQDYAGAA SGGGRWQDNN MSSGYGGRQG NNRSGYGGRP GQPRDWSGQN RGGGYASRAG SGNRGGGMQM DGSTRMVSLN RGVRT

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.