Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16358 | Canola | cytosol | 81.22 | 87.65 |
| CDY65406 | Canola | cytosol | 79.11 | 87.47 |
| CDX72169 | Canola | cytosol | 81.0 | 87.41 |
| CDY27241 | Canola | cytosol | 83.33 | 86.51 |
| Bra022520.1-P | Field mustard | cytosol | 82.11 | 85.43 |
| Bra007220.1-P | Field mustard | cytosol | 84.22 | 84.69 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 7.0 | 75.9 |
| AT3G22860.1 | Thale cress | cytosol | 63.44 | 70.93 |
| KRH60516 | Soybean | endoplasmic reticulum | 70.11 | 68.22 |
| KRH41811 | Soybean | cytosol | 70.11 | 68.14 |
| KRH68073 | Soybean | endoplasmic reticulum | 69.0 | 67.06 |
| PGSC0003DMT400046928 | Potato | cytosol | 68.56 | 66.92 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 67.11 | 66.81 |
| PGSC0003DMT400078176 | Potato | cytosol | 67.56 | 66.52 |
| HORVU2Hr1G058390.1 | Barley | cytosol | 11.78 | 65.03 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 63.89 | 64.46 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 25.44 | 64.33 |
| Solyc01g102560.2.1 | Tomato | nucleus | 22.11 | 64.19 |
| Solyc01g102600.2.1 | Tomato | cytosol | 25.44 | 64.15 |
| KXG35906 | Sorghum | cytosol | 63.56 | 61.31 |
| Zm00001d002169_P006 | Maize | cytosol | 63.33 | 61.29 |
| Zm00001d020935_P002 | Maize | cytosol | 56.0 | 61.24 |
| Os07t0124500-01 | Rice | nucleus | 63.67 | 61.22 |
| Zm00001d002166_P004 | Maize | cytosol | 63.11 | 61.08 |
| TraesCS5D01G228100.1 | Wheat | golgi, unclear | 62.44 | 60.56 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 62.33 | 60.52 |
| TraesCS5A01G406000.1 | Wheat | cytosol | 62.0 | 60.45 |
| TraesCS5B01G219100.1 | Wheat | nucleus | 62.33 | 60.45 |
| TraesCS5B01G410800.1 | Wheat | cytosol | 62.33 | 60.45 |
| HORVU2Hr1G058370.1 | Barley | cytosol | 12.22 | 60.44 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 62.22 | 60.34 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 62.11 | 60.3 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 60.78 | 59.01 |
| Zm00001d002737_P002 | Maize | vacuole | 60.67 | 56.35 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 3.89 | 55.56 |
| EES13928 | Sorghum | cytosol | 54.22 | 54.53 |
| Solyc01g102590.2.1 | Tomato | nucleus | 24.56 | 53.9 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | EntrezGene:824781 | ProteinID:AEE79486.1 | ProteinID:AEE79487.1 | EMBL:AF040102 |
| ArrayExpress:AT3G56150 | EnsemblPlantsGene:AT3G56150 | RefSeq:AT3G56150 | TAIR:AT3G56150 | RefSeq:AT3G56150-TAIR-G | EnsemblPlants:AT3G56150.1 |
| TAIR:AT3G56150.1 | EMBL:AY064006 | Unigene:At.5061 | EMBL:BT001961 | ProteinID:CAB87414.1 | ncoils:Coil |
| InterPro:EIF3C | Symbol:EIF3C | InterPro:EIF3C_N_dom | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000717 | InterPro:IPR036388 | HAMAP:MF_03002 |
| RefSeq:NP_001190102.1 | RefSeq:NP_191174.1 | UniProt:O49160 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF05470 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50250 |
| PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000000BD6A | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
Coordinates
chr3:-:20833410..20837275
Molecular Weight (calculated)
102955.0 Da
IEP (calculated)
4.997
GRAVY (calculated)
-0.693
Length
900 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.