Factsheet for HORVU2Hr1G058390.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular
MultiLoc:	cytosol
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G029090.1
HORVU1Hr1G048620.1
HORVU1Hr1G059220.10
HORVU2Hr1G074740.2
HORVU2Hr1G074780.1
HORVU4Hr1G014100.3
HORVU4Hr1G086160.1
HORVU5Hr1G008250.6
HORVU5Hr1G072560.1
HORVU5Hr1G106440.1
HORVU6Hr1G027500.11

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	HORVU1Hr1G059220.10	AT1G50030.1	23524850
AT3G56150.1	HORVU5Hr1G072560.1	AT3G57290.1	11029466
AT3G56150.1	HORVU0Hr1G029090.1	AT3G61140.1	11029466
AT3G56150.1	HORVU1Hr1G048620.1	AT3G61140.1	11029466
AT3G56150.1	HORVU4Hr1G086160.1	AT3G61140.1	11029466
AT3G56150.1	HORVU6Hr1G027500.11	AT3G61140.1	11029466
AT3G56150.1	HORVU2Hr1G074740.2	AT4G14110.1	11029466
AT3G56150.1	HORVU2Hr1G074780.1	AT4G14110.1	11029466
AT3G56150.1	HORVU4Hr1G014100.3	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G008250.6	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G106440.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G058370.1	Barley	cytosol	100.0	89.56
Solyc01g102600.2.1	Tomato	cytosol	65.64	29.97
Solyc01g102570.2.1	Tomato	cytosol, nucleus	64.42	29.49
HORVU5Hr1G063770.2	Barley	nucleus	88.96	15.64
Zm00001d020935_P002	Maize	cytosol	77.91	15.43
Os07t0124500-01	Rice	nucleus	84.05	14.64
HORVU5Hr1G098600.1	Barley	cytosol	82.82	14.56
KXG35906	Sorghum	cytosol	80.98	14.15
Zm00001d002169_P006	Maize	cytosol	80.37	14.09
Zm00001d002166_P004	Maize	cytosol	79.75	13.98
GSMUA_Achr3P04920_001	Banana	cytosol	73.62	13.45
Zm00001d002737_P002	Maize	vacuole	78.53	13.21
VIT_08s0007g07180.t01	Wine grape	cytosol	70.55	12.16
PGSC0003DMT400078176	Potato	cytosol	67.48	12.04
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	66.26	11.95
AT3G56150.1	Thale cress	cytosol	65.03	11.78
KRH41811	Soybean	cytosol	65.64	11.56
KRH68073	Soybean	endoplasmic reticulum	65.03	11.45
CDY16358	Canola	cytosol	58.28	11.39
CDX72169	Canola	cytosol	58.28	11.39
KRH60516	Soybean	endoplasmic reticulum	64.42	11.35
PGSC0003DMT400046928	Potato	cytosol	63.19	11.17
Bra022520.1-P	Field mustard	cytosol	58.9	11.1
CDY27241	Canola	cytosol	58.28	10.96
CDY65406	Canola	cytosol	54.6	10.93
Bra007220.1-P	Field mustard	cytosol	58.28	10.61
CDX71953	Canola	cytosol	50.92	10.12
AT3G22860.1	Thale cress	cytosol	48.47	9.81
Bra007396.1-P	Field mustard	cytosol, mitochondrion	47.24	9.32
CDY06037	Canola	cytosol	34.36	7.67
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	1.84	4.76
Solyc01g102590.2.1	Tomato	nucleus	6.13	2.44
VIT_16s0039g01140.t01	Wine grape	cytosol	0.0	0.0
Solyc01g102560.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A287I3I1	InterPro:EIF3C_N_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	EnsemblPlantsGene:HORVU2Hr1G058390
EnsemblPlants:HORVU2Hr1G058390.1	PFAM:PF05470	PANTHER:PTHR13937	UniParc:UPI000B4897EA	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:-:381076619..381078152

Molecular Weight (calculated)

18166.6 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.556

Length

163 amino acids

Sequence
(BLAST)

001: MASDSDSGND DDPSEDGGAW EKKLSKKDKI MDKQFLKDTS EITWDIVDKK LKEIVASRGK KGTGRVERVE QLTFFTGVAK TPAQKLEILF HVISAQFDVN
101: PSLLGHMPVN VWKKCVNNML LVLDILQQYP NIVVDNSVEA DEKETQKGAD YDGTIHVTGG KTR

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.