CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10462
KRH27589
KRH33363
KRH43983
KRH48239
KRH48727
KRH61614
KRH64883
KRH65148
KRH66844
KRH77911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	KRH27589	AT1G50030.1	23524850
AT3G56150.1	KRH77911	AT1G50030.1	23524850
AT3G56150.1	KRH48239	AT3G61140.1	11029466
AT3G56150.1	KRH65148	AT3G61140.1	11029466
AT3G56150.1	KRH10462	AT4G14110.1	11029466
AT3G56150.1	KRH33363	AT4G14110.1	11029466
AT3G56150.1	KRH43983	AT4G14110.1	11029466
AT3G56150.1	KRH48727	AT5G25780.1	11029466
AT3G56150.1	KRH61614	AT5G25780.1	11029466
AT3G56150.1	KRH64883	AT5G25780.1	11029466
AT3G56150.1	KRH66844	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60516	Soybean	endoplasmic reticulum	96.76	96.86
KRH68073	Soybean	endoplasmic reticulum	85.64	85.64
VIT_16s0039g01140.t01	Wine grape	cytosol	7.56	84.34
CDY65406	Canola	cytosol	63.07	71.74
Solyc01g102570.2.1	Tomato	cytosol, nucleus	27.54	71.63
PGSC0003DMT400046928	Potato	cytosol	71.27	71.58
CDY16358	Canola	cytosol	64.15	71.22
Solyc01g102600.2.1	Tomato	cytosol	27.32	70.87
CDX72169	Canola	cytosol	63.71	70.74
AT3G56150.1	Thale cress	cytosol	68.14	70.11
GSMUA_Achr3P04920_001	Banana	cytosol	66.85	69.39
PGSC0003DMT400078176	Potato	cytosol	68.36	69.26
Bra022520.1-P	Field mustard	cytosol	64.69	69.25
CDY27241	Canola	cytosol	64.69	69.09
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	67.17	68.81
Bra007220.1-P	Field mustard	cytosol	65.87	68.16
Solyc01g102560.2.1	Tomato	nucleus	22.46	67.1
CDY06037	Canola	cytosol	52.16	66.16
HORVU2Hr1G058390.1	Barley	cytosol	11.56	65.64
Os07t0124500-01	Rice	nucleus	66.31	65.6
Zm00001d020935_P002	Maize	cytosol	57.88	65.13
KXG35906	Sorghum	cytosol	65.33	64.84
Zm00001d002169_P006	Maize	cytosol	64.9	64.62
Zm00001d002166_P004	Maize	cytosol	64.79	64.52
TraesCS5A01G406000.1	Wheat	cytosol	63.28	63.49
TraesCS5A01G220000.1	Wheat	nucleus	63.5	63.36
HORVU5Hr1G063770.2	Barley	nucleus	63.28	63.21
TraesCS5B01G410800.1	Wheat	cytosol	63.28	63.15
TraesCS5D01G416000.1	Wheat	cytosol	63.07	63.0
Bra007396.1-P	Field mustard	cytosol, mitochondrion	56.16	62.95
TraesCS5D01G228100.1	Wheat	golgi, unclear	62.96	62.82
CDX71953	Canola	cytosol	55.62	62.8
TraesCS5B01G219100.1	Wheat	nucleus	62.85	62.72
HORVU5Hr1G098600.1	Barley	cytosol	61.99	61.92
AT3G22860.1	Thale cress	cytosol	53.24	61.24
HORVU2Hr1G058370.1	Barley	cytosol	11.99	60.99
Zm00001d002737_P002	Maize	vacuole	61.88	59.13
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.89	57.14
Solyc01g102590.2.1	Tomato	nucleus	24.95	56.34
EES13928	Sorghum	cytosol	53.67	55.53

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100781967	MapMan:17.4.1.3.3	EMBL:ACUP02004781	ncoils:Coil	InterPro:EIF3C
InterPro:EIF3C_N_dom	EnsemblPlantsGene:GLYMA_08G052900	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	UniProt:I1KQJ6
InterPro:IPR000717	InterPro:IPR036388	ProteinID:KRH41809.1	ProteinID:KRH41810.1	EnsemblPlants:KRH41811	ProteinID:KRH41811
ProteinID:KRH41811.1	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250
PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00023380E1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4101315..4105399

Molecular Weight (calculated)

104650.0 Da

IEP (calculated)

5.516

GRAVY (calculated)

-0.616

Length

926 amino acids

Sequence
(BLAST)

001: MASRFWTQGG SDSEEEESDY DEEVDTTVGE ASGQAVTSRY LQDNASDSDD SDGQKRVVRS AKDKRFEEMA STVDQMKNAM KINDWVSLQE SFDKINKQLE
101: KVMRVTESER VPNLYIKALV MLEDFLAQAL ANKDAKKKMS SSNAKALNSM KQKLKKNNKQ YEDLINKCRE NPESEEEKEE EESDEEYDSD GEIIDPDQLQ
201: KPEAKSDSEA SQYEDEKPDA GEGPWDQKLS KKDRLLDRQF MKNPSEITWD AVNKKFKEVV AARGRKGTGR FEQVEQLTFL TKVAKTPAQK LEILFSVVSA
301: QFDVNPGLNG HMPINVWKKC VQNMLIILDI LVQYPNIMVD DSVEPDENET QKGAEHNGTI RVWGNLVAFL ERIDVEFFKS LQCIDPHTRD YVERLRDEPT
401: FLVLAQNVQE YLERVGNFKA ASKVALRRVE LIYYKPQEVY DAMRKLTELT EDGDNGGEAS EKEFEESRIP TAFVVTPEVV TRKPTFPENS RTLMDILVSM
501: IYKYGDERTK ARAMLCDIYH HALLDEFSIA RDLLLMSHLQ DSVQHMDIST QILFNRAMSQ LGLCAFRVGL ISEAHGCLSE LYSGGRVKEL LAQGVSQSRY
601: HEKTPEQERL ERRRQMPYHM HINLELLEAV HLVSAMLLEV PNMAANVHDA KRKVISKTFR RLLEVSEKQT FTGPPENVRD HVMAATRILR KGDFQKAFDI
701: IVSLDVWKFV RNRDTVLEML KDKIKEEALR TYLFTFSSSY ESLSLDQLTK FFDLSVSRTH SIVSRMMINE ELHASWDQPT GCILFQDVEH SRLQALVFQL
801: TEKLSVLAES NEKATEARVG GGGLDLPLRR RDGQDYAAAA AAGSGTASTG GRWQDLSPSQ PRQGSGRAGY GGRPMTLGQA AGSGYSRGRG RGSYGGSGRT
901: SQRGSALRGP QGDGPARMVS LKGVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.