Factsheet for Solyc01g102570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088370.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc01g106840.1.1
Solyc10g079880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Solyc01g106840.1.1	AT1G50030.1	23524850
AT3G56150.1	Solyc10g079880.1.1	AT3G57290.1	11029466
AT3G56150.1	Solyc01g091650.2.1	AT3G61140.1	11029466
AT3G56150.1	Solyc01g104600.2.1	AT4G14110.1	11029466
AT3G56150.1	Solyc01g088370.2.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102600.2.1	Tomato	cytosol	98.6	98.32
VIT_16s0039g01140.t01	Wine grape	cytosol	18.54	79.52
HORVU2Hr1G058390.1	Barley	cytosol	29.49	64.42
HORVU2Hr1G058370.1	Barley	cytosol	30.9	60.44
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	9.27	52.38
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	78.93	31.08
VIT_08s0007g07180.t01	Wine grape	cytosol	74.44	28.01
KRH41811	Soybean	cytosol	71.63	27.54
KRH60516	Soybean	endoplasmic reticulum	71.35	27.46
Zm00001d020935_P002	Maize	cytosol	62.92	27.22
KRH68073	Soybean	endoplasmic reticulum	70.22	27.0
GSMUA_Achr3P04920_001	Banana	cytosol	65.45	26.12
Bra022520.1-P	Field mustard	cytosol	62.92	25.9
CDY65406	Canola	cytosol	58.43	25.55
CDY16358	Canola	cytosol	59.83	25.54
CDY27241	Canola	cytosol	62.08	25.49
AT3G56150.1	Thale cress	cytosol	64.33	25.44
CDX72169	Canola	cytosol	59.55	25.42
Zm00001d002166_P004	Maize	cytosol	65.17	24.95
KXG35906	Sorghum	cytosol	65.17	24.87
Zm00001d002169_P006	Maize	cytosol	64.89	24.84
Bra007220.1-P	Field mustard	cytosol	62.08	24.69
Os07t0124500-01	Rice	nucleus	64.89	24.68
TraesCS5B01G410800.1	Wheat	cytosol	62.64	24.03
TraesCS5A01G220000.1	Wheat	nucleus	62.64	24.03
HORVU5Hr1G063770.2	Barley	nucleus	62.36	23.95
TraesCS5B01G219100.1	Wheat	nucleus	62.36	23.92
TraesCS5D01G228100.1	Wheat	golgi, unclear	62.36	23.92
TraesCS5A01G406000.1	Wheat	cytosol	60.67	23.4
TraesCS5D01G416000.1	Wheat	cytosol	60.39	23.19
HORVU5Hr1G098600.1	Barley	cytosol	59.55	22.87
Zm00001d002737_P002	Maize	vacuole	61.8	22.7
Bra007396.1-P	Field mustard	cytosol, mitochondrion	50.0	21.55
CDX71953	Canola	cytosol	48.31	20.98
CDY06037	Canola	cytosol	42.98	20.96
EES13928	Sorghum	cytosol	52.25	20.78
AT3G22860.1	Thale cress	cytosol	45.22	20.0
Solyc01g102590.2.1	Tomato	nucleus	5.34	4.63
Solyc01g102560.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	ncoils:Coil	InterPro:EIF3C_N_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	UniProt:K4B1I5
PFAM:PF05470	PANTHER:PTHR13937	EnsemblPlantsGene:Solyc01g102570.2	EnsemblPlants:Solyc01g102570.2.1	UniParc:UPI0002767C68	SEG:seg

Description

No Description!

Coordinates

chr1:-:91350118..91370051

Molecular Weight (calculated)

40127.6 Da

IEP (calculated)

4.307

GRAVY (calculated)

-0.930

Length

356 amino acids

Sequence
(BLAST)

001: MASRFWTQGD SDTEEEEESD YEVEDDAPAE NPDAPSGPGA RYLAADDSDS DESDGQKRVV RSAKDKRFEE LSATVDQMKN AMKINDWVSL QESFDKINKQ
101: LEKVMRITES IKPPNLYIKA LVMLEDFLNQ ALANKETRKK MSSSNAKALN SMKQKLKKNN KQYEELINKY RENPPVSEEE GGDDEESEEE EEEDDFEEDP
201: TKIAAASASD DDDPDTIGDG WEKKVNKKDK LLDKQFKDPS QITWEIVNKK FKEIVAARGR KGTGKMELVE QLTFLTKVAK TPAQKLEILF GVVSAQFDIN
301: PGLSGHMPIN VWKRCVQNML TILDVLTQYP NIVVDDMVEP DENETQKGAD HSGTTX

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.