CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06037	Canola	cytosol	75.12	84.38
CDY65406	Canola	cytosol	69.76	70.27
CDX72169	Canola	cytosol	69.15	67.99
CDY16358	Canola	cytosol	69.02	67.87
CDY27241	Canola	cytosol	69.15	65.4
VIT_16s0039g01140.t01	Wine grape	cytosol	6.22	61.45
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	62.2	56.42
PGSC0003DMT400078176	Potato	cytosol	62.2	55.8
KRH41811	Soybean	cytosol	62.8	55.62
KRH60516	Soybean	endoplasmic reticulum	62.68	55.57
KRH68073	Soybean	endoplasmic reticulum	62.2	55.08
PGSC0003DMT400046928	Potato	cytosol	60.73	54.01
GSMUA_Achr3P04920_001	Banana	cytosol	57.93	53.25
Zm00001d020935_P002	Maize	cytosol	52.8	52.61
Os07t0124500-01	Rice	nucleus	59.02	51.71
Zm00001d002169_P006	Maize	cytosol	58.05	51.18
KXG35906	Sorghum	cytosol	58.17	51.13
Zm00001d002166_P004	Maize	cytosol	57.93	51.08
HORVU2Hr1G058390.1	Barley	cytosol	10.12	50.92
TraesCS5D01G416000.1	Wheat	cytosol	57.07	50.49
Solyc01g102560.2.1	Tomato	nucleus	19.02	50.32
TraesCS5A01G220000.1	Wheat	nucleus	56.83	50.22
TraesCS5A01G406000.1	Wheat	cytosol	56.46	50.16
TraesCS5B01G410800.1	Wheat	cytosol	56.71	50.11
HORVU5Hr1G098600.1	Barley	cytosol	56.59	50.05
HORVU5Hr1G063770.2	Barley	nucleus	56.59	50.05
TraesCS5D01G228100.1	Wheat	golgi, unclear	56.59	50.0
TraesCS5B01G219100.1	Wheat	nucleus	56.46	49.89
Solyc01g102570.2.1	Tomato	cytosol, nucleus	20.98	48.31
Solyc01g102600.2.1	Tomato	cytosol	20.98	48.18
Zm00001d002737_P002	Maize	vacuole	56.22	47.57
EES13928	Sorghum	cytosol	50.49	46.26
HORVU2Hr1G058370.1	Barley	cytosol	10.24	46.15
Solyc01g102590.2.1	Tomato	nucleus	21.1	42.2
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	1.71	22.22

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.3	GO:A0A078CAA9	EnsemblPlants:CDX71953	ProteinID:CDX71953	ProteinID:CDX71953.1
ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00155713001	InterPro:IPR000717	HAMAP:MF_03002
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	PANTHER:PTHR13937:SF0
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EE27CD	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaC08g29210D

Coordinates

chrLK031795:-:1462467..1469353

Molecular Weight (calculated)

94105.0 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.520

Length

820 amino acids

Sequence
(BLAST)

001: MLNSKLFAKP GSESENGSST EEELDEVQDT NTAGGASRYL PGGSDTDDGD LPKRVVQPGK DKRFEEMVHT AEQMKHAMNI NNWVSLLENF DKINKQLEKV
101: MRIKEAVKAP VLYIKTLVML EDFLNETTLE AKNEMSHSNS KALNSMRQRL KCWNENFYKD GESVRLQASF RSKLLVVSFL KHSLLENGLI YKPHKQLLLP
201: TTPLNSKMYE EEINKYRESS ETEEAKVSEE ELCNKDPKEI TWEWINQKLK EVVSARGRKG TARSELIDQL THLMRLAKTP AQKLEILFGL VSAQFDVNPG
301: LNGHMPINVW KKCVNNMFTI LDILVKYDNI VVDDTVEQDK NETSKPEDYD GKIRVWGNLV AFVERIDAEF FKSLQSVDPY TREYVERLRD ELVFLALTQN
401: IQDYFERCGD FKSAAKVALR RVESLYYKPQ EVYDAMRKRA EQEDDSNGPV VPRKPTFPVS SRAMMDGLVS LIYKYGDERT KARAMLCDIY HHSLMDKFGT
501: ARDLLLMSHL QDNVQHMDIS TQILFNRSMA QLGLCAFRVG MFTEAHSCLS ELCSGQRARE LLAQGVSQSR KEKTPEQERL ERRRQMPYHM YINLELLEAV
601: HLICAMLLEV PNMSANSHDA RRKVISKNIR RLLEISDRQA FTAPPENFRD HVMAATRALS KGDFEKAVEV LSSLDIWKLR KNRETVLDMV KARVKEEALK
701: TYLLRYSSSY ESLRLDHLAN MFGLSENQVH SIVSKMMISE ELHAYWDQPT HCILFHDVQH NRLQTLAFQL IGKLAVLAES NEKAMEARTG GYGGRGGTEN
801: RGMQMDGTSR MVSLSRGVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.