Factsheet for HORVU5Hr1G063770.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G029090.1
HORVU1Hr1G048620.1
HORVU1Hr1G059220.10
HORVU2Hr1G074740.2
HORVU2Hr1G074780.1
HORVU4Hr1G014100.3
HORVU4Hr1G086160.1
HORVU5Hr1G008250.6
HORVU5Hr1G072560.1
HORVU5Hr1G106440.1
HORVU6Hr1G027500.11

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	HORVU1Hr1G059220.10	AT1G50030.1	23524850
AT3G56150.1	HORVU5Hr1G072560.1	AT3G57290.1	11029466
AT3G56150.1	HORVU0Hr1G029090.1	AT3G61140.1	11029466
AT3G56150.1	HORVU1Hr1G048620.1	AT3G61140.1	11029466
AT3G56150.1	HORVU4Hr1G086160.1	AT3G61140.1	11029466
AT3G56150.1	HORVU6Hr1G027500.11	AT3G61140.1	11029466
AT3G56150.1	HORVU2Hr1G074740.2	AT4G14110.1	11029466
AT3G56150.1	HORVU2Hr1G074780.1	AT4G14110.1	11029466
AT3G56150.1	HORVU4Hr1G014100.3	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G008250.6	AT5G25780.1	11029466
AT3G56150.1	HORVU5Hr1G106440.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G220000.1	Wheat	nucleus	98.38	98.28
TraesCS5D01G228100.1	Wheat	golgi, unclear	97.63	97.52
TraesCS5B01G219100.1	Wheat	nucleus	97.52	97.41
HORVU2Hr1G058390.1	Barley	cytosol	15.64	88.96
HORVU5Hr1G098600.1	Barley	cytosol	85.01	85.01
HORVU2Hr1G058370.1	Barley	cytosol	16.5	84.07
KXG35906	Sorghum	cytosol	82.09	81.56
Os07t0124500-01	Rice	nucleus	81.98	81.2
Zm00001d002169_P006	Maize	cytosol	80.58	80.32
Zm00001d002166_P004	Maize	cytosol	80.47	80.22
Zm00001d020935_P002	Maize	cytosol	67.96	76.55
Zm00001d002737_P002	Maize	vacuole	76.59	73.27
GSMUA_Achr3P04920_001	Banana	cytosol	66.99	69.62
VIT_16s0039g01140.t01	Wine grape	cytosol	6.15	68.67
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	4.53	66.67
CDY65406	Canola	cytosol	57.39	65.36
VIT_08s0007g07180.t01	Wine grape	cytosol	66.13	64.8
CDY16358	Canola	cytosol	58.25	64.75
CDX72169	Canola	cytosol	58.25	64.75
PGSC0003DMT400078176	Potato	cytosol	63.11	64.0
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	62.35	63.94
PGSC0003DMT400046928	Potato	cytosol	63.0	63.34
CDY27241	Canola	cytosol	59.22	63.32
KRH41811	Soybean	cytosol	63.21	63.28
KRH60516	Soybean	endoplasmic reticulum	62.89	63.03
KRH68073	Soybean	endoplasmic reticulum	62.78	62.85
Bra022520.1-P	Field mustard	cytosol	58.58	62.77
Solyc01g102570.2.1	Tomato	cytosol, nucleus	23.95	62.36
Bra007220.1-P	Field mustard	cytosol	60.09	62.23
AT3G56150.1	Thale cress	cytosol	60.3	62.11
Solyc01g102600.2.1	Tomato	cytosol	23.84	61.9
Solyc01g102560.2.1	Tomato	nucleus	20.39	60.97
CDY06037	Canola	cytosol	46.71	59.32
Bra007396.1-P	Field mustard	cytosol, mitochondrion	50.81	57.02
CDX71953	Canola	cytosol	50.05	56.59
AT3G22860.1	Thale cress	cytosol	47.46	54.66
Solyc01g102590.2.1	Tomato	nucleus	22.55	50.98

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:HORVU5Hr1G063770	EnsemblPlants:HORVU5Hr1G063770.2	InterPro:IPR000717	InterPro:IPR036388
UniProt:M0YIK4	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250
PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00029509C8	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:M0YIK4]

Coordinates

chrchr5H:+:494235084..494239882

Molecular Weight (calculated)

104860.0 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.722

Length

927 amino acids

Sequence
(BLAST)

001: MASRFWGQGD SDSEEDVDEI ESEQGSDSEK SEAGDGGRDG SKNRYLNKYT QDSDDSDTES HRVIRSLKDK RNDEMKATAD QMRNAMKIND WISLQECFDK
101: LNKQLDKVVR VNESAKIPNG YITTLVLLED FLAEALANKE AKKKMSSSNA KALNAVKQKL KKNNKQYEDL IQKCRENPES FEDDVADDKD VDDDDDDSGD
201: DVVDPDKMAS DSDSGNDDDP SEDGGAWEKK LSKKDKIMDK QFLKDPSEIT WDIVDKKLKE IVASRGKKGT GRVERVEQLT FLTRVAKTPA QKLEILFHVI
301: SAQFDVNPSL LGHMPVNVWK KCVNNMLLVL DILQQYPNIV VDNSVEADEK ETQKGADYDG TIHVTGDLVA FLERIDSEFF KSLQCSDPYT KDYVQRLRDE
401: PLFLVLAQNV QEYQERVENH KAAAKVALRR VELVYYKPQE VYDAMRKLAE QTEVIMEDGD IEGNEEHQAA DDNRGPPPFI VIPEVVPRKP TFPESGRVLM
501: DGLMSLIYKY GDERTKARAM LCHIYNYAIS DEFSVARDLL LMSRLQDGIQ LMDISSQILY NRVMAQLGLC AFRAGLIADA HGCLSELYAT GRVKELLAQG
601: VQYSRYHERT PEQERLERRR MMPYHMHINL ELLEATHLIC AMLIEVPYMA SSTYDKRRPM SKTFRRLLEM SERQTFVGPP ETVRDHVMAA TRALNKGDHE
701: KAFSVISSLD TWKLLRNKEH ILEMLKLKIK EEALRTYLFS YSSCYESLSL DQLTTMFDLS EAHAHSVVSK MMMHDELHAS WDQPTKCIVF QNVDQTRLQG
801: LIFQMTDRLS VLVESNERAY EARTGGALEG APPRRRGDQD SSNMGKWQEN FVSSQGGRRG GGRSGYAGRG GSGQGGGYQN DRGGQGSRGG YGGGSRFQDG
901: RSRNQSGSSS RGDGNGRMVN LNRPGRN

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.