Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G301900.1 | Wheat | golgi | 83.33 | 94.39 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 78.38 | 88.78 |
| Os04t0428900-01 | Rice | cytosol | 73.87 | 83.67 |
| Zm00001d003685_P001 | Maize | extracellular | 71.17 | 80.61 |
| OQU81583 | Sorghum | cytosol | 70.72 | 80.1 |
| Zm00001d025407_P001 | Maize | cytosol | 69.82 | 79.08 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 55.86 | 62.94 |
| Solyc01g104600.2.1 | Tomato | cytosol | 54.05 | 60.91 |
| KRH10462 | Soybean | cytosol | 52.25 | 58.88 |
| PGSC0003DMT400076584 | Potato | cytosol | 52.25 | 58.88 |
| KRH43983 | Soybean | cytosol | 52.25 | 58.88 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 51.35 | 57.87 |
| CDY12369 | Canola | cytosol | 50.45 | 56.85 |
| CDY01192 | Canola | cytosol | 50.45 | 56.85 |
| Bra038444.1-P | Field mustard | cytosol | 50.45 | 56.85 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 81.98 | 56.35 |
| AT4G14110.1 | Thale cress | cytosol | 50.0 | 56.35 |
| CDY27125 | Canola | cytosol | 50.0 | 56.35 |
| KRH33363 | Soybean | cytosol | 44.59 | 54.4 |
| CDY12734 | Canola | cytosol | 51.35 | 52.29 |
| Bra032760.1-P | Field mustard | cytosol | 50.9 | 51.13 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.3.3.1.8 | UniProt:A0A287IGP1 | InterPro:COP9_CSN8 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0010387 | GO:GO:0016043 |
| GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G074780 | EnsemblPlants:HORVU2Hr1G074780.1 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF10075 |
| PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI000B47A809 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:-:539329605..539333081
Molecular Weight (calculated)
24800.5 Da
IEP (calculated)
7.251
GRAVY (calculated)
-0.323
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: GIAQSQRPKP SPPTPHRRRS PPPPSPMDLS AVHAALSAKS YSAMATLCDD LLLQVASRGV ATDDWPYAVH LLAHLYLNDL NSARFLWKTV PQEVKDAHPE
101: LGAIWKIGQC LWNRDYAGVY TSAQGFEWGP EIADFMAGFL ESYRKRIFEL LTSAYTTISI ADVAHFMGMS EEDATNYAVQ NGWSLDAAAK MLTVRKQKPQ
201: TNQKLDASKL QRLTECVFHL EH
101: LGAIWKIGQC LWNRDYAGVY TSAQGFEWGP EIADFMAGFL ESYRKRIFEL LTSAYTTISI ADVAHFMGMS EEDATNYAVQ NGWSLDAAAK MLTVRKQKPQ
201: TNQKLDASKL QRLTECVFHL EH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.