Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G069880.1 | Barley | cytosol | 13.73 | 92.86 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 26.76 | 67.86 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 72.89 | 46.41 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 72.89 | 46.31 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 71.83 | 45.74 |
| EER92981 | Sorghum | cytosol | 66.9 | 42.89 |
| Os03t0116500-01 | Rice | cytosol | 66.55 | 42.86 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 65.49 | 41.8 |
| GSMUA_Achr11P... | Banana | cytosol | 60.92 | 38.44 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 73.59 | 38.0 |
| PGSC0003DMT400071374 | Potato | cytosol | 58.8 | 37.95 |
| Solyc01g091650.2.1 | Tomato | cytosol | 58.45 | 37.73 |
| GSMUA_Achr11P... | Banana | cytosol | 59.86 | 37.61 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 59.86 | 37.44 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 57.39 | 36.96 |
| KRH65148 | Soybean | cytosol | 57.39 | 36.71 |
| HORVU1Hr1G048620.1 | Barley | plastid | 61.97 | 36.14 |
| KRH48239 | Soybean | cytosol | 56.34 | 35.87 |
| AT3G61140.1 | Thale cress | cytosol | 54.58 | 35.15 |
| CDY52333 | Canola | cytosol | 54.93 | 35.14 |
| CDY65304 | Canola | cytosol | 54.58 | 34.99 |
| CDY45683 | Canola | cytosol | 54.93 | 34.44 |
| Bra007576.1-P | Field mustard | cytosol | 52.82 | 34.4 |
| CDX67853 | Canola | cytosol | 54.58 | 34.22 |
| Bra003438.1-P | Field mustard | cytosol | 54.58 | 34.22 |
| HORVU2Hr1G083860.1 | Barley | cytosol | 21.48 | 15.72 |
| HORVU6Hr1G054100.2 | Barley | cytosol, nucleus | 21.83 | 14.73 |
| HORVU0Hr1G004970.2 | Barley | cytosol | 19.72 | 14.18 |
| Zm00001d048502_P002 | Maize | cytosol | 5.28 | 8.77 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A287TP03 | InterPro:CSN1 | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G027500 | EnsemblPlants:HORVU6Hr1G027500.11 | InterPro:IPR000717 |
| InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 |
| InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000B4758CB | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:108209680..108214115
Molecular Weight (calculated)
31832.4 Da
IEP (calculated)
9.531
GRAVY (calculated)
-0.213
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: SHPRAPAPPP PPPRPSPQSS PTLFDLLASS AAIPADLRGP QPWRPSCKRS RTSRTSKAEQ TPDTLDAAIV AKLRAAAGLA NLETKKYKLA ACKFLETGPE
101: LGSNYSEVIA PQDVAVYGAL CALASFDHLE LKSKVIDNIN FRNFLELVPE VRELVNDFYA NRYGSCLEHL EKLKPNLLLD IHLREHLETL YNDIRHKAIV
201: QYTIPFISVD LNTMASAFKS SVSMLEKELA ALITENKIQA RIDFHNKILC ARHADQRNAT FLQARSLFVV SFVSRYRRNI RVFI
101: LGSNYSEVIA PQDVAVYGAL CALASFDHLE LKSKVIDNIN FRNFLELVPE VRELVNDFYA NRYGSCLEHL EKLKPNLLLD IHLREHLETL YNDIRHKAIV
201: QYTIPFISVD LNTMASAFKS SVSMLEKELA ALITENKIQA RIDFHNKILC ARHADQRNAT FLQARSLFVV SFVSRYRRNI RVFI
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.