Factsheet for VIT_15s0048g01980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_08s0040g00430.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_14s0171g00270.t01
VIT_15s0021g01580.t01
VIT_15s0048g01980.t01
VIT_16s0039g01140.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61140.1	VIT_15s0021g01580.t01	AT1G02090.1	10330469
AT3G61140.1	VIT_15s0021g01580.t01	AT1G02090.1	11742986
AT3G61140.1	VIT_15s0021g01580.t01	AT1G02090.1	11854419
AT3G61140.1	VIT_15s0021g01580.t01	AT1G02090.1	12615944
AT3G61140.1	VIT_03s0038g04360.t01	AT1G22920.1	12615944
AT3G61140.1	VIT_03s0038g04360.t01	AT1G22920.1	9811788
AT3G61140.1	VIT_03s0038g04360.t01	AT1G71230.1	9811788
AT3G61140.1	VIT_08s0040g00430.t01	AT2G26990.1	11854419
AT3G61140.1	VIT_08s0040g00430.t01	AT2G26990.1	12615944
AT3G61140.1	VIT_16s0039g01140.t01	AT3G56150.1	11029466
AT3G61140.1	VIT_15s0048g01980.t01	AT3G61140.1	12615944
AT3G61140.1	VIT_12s0055g00390.t01	AT4G14110.1	11701877
AT3G61140.1	VIT_12s0055g00390.t01	AT4G14110.1	12615944
AT3G61140.1	VIT_12s0055g00390.t01	AT4G14110.1	9811788
AT3G61140.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT3G61140.1	VIT_12s0035g01450.t01	AT5G42970.1	11854419
AT3G61140.1	VIT_18s0001g12250.t01	AT5G42970.1	11854419
AT3G61140.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT3G61140.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091650.2.1	Tomato	cytosol	83.22	83.41
PGSC0003DMT400071374	Potato	cytosol	82.77	82.95
KRH65148	Soybean	cytosol	80.95	80.41
KRH48239	Soybean	cytosol	80.95	80.04
AT3G61140.1	Thale cress	cytosol	77.78	77.78
CDY45683	Canola	cytosol	78.23	76.16
CDX67853	Canola	cytosol	77.55	75.5
Bra003438.1-P	Field mustard	cytosol	77.32	75.28
GSMUA_Achr8P11930_001	Banana	cytosol	76.64	74.45
Bra007576.1-P	Field mustard	cytosol	73.47	74.31
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	18.82	74.11
CDY52333	Canola	cytosol	74.38	73.87
CDY65304	Canola	cytosol	74.15	73.81
GSMUA_Achr11P...	Banana	cytosol	74.38	72.89
GSMUA_Achr11P...	Banana	cytosol	74.6	72.79
Os03t0116500-01	Rice	cytosol	71.88	71.88
EER92981	Sorghum	cytosol	72.11	71.78
Zm00001d027359_P001	Maize	cytosol, extracellular	71.2	70.56
TraesCS1D01G187600.1	Wheat	cytosol	61.22	70.5
TraesCS4D01G350200.1	Wheat	cytosol, golgi	69.39	68.61
TraesCS4B01G356500.1	Wheat	cytosol	69.16	68.23
TraesCS5A01G525900.1	Wheat	cytosol, unclear	68.93	68.16
TraesCS1A01G188800.1	Wheat	cytosol	65.99	66.74
TraesCS1B01G196500.2	Wheat	cytosol	66.21	65.03
HORVU1Hr1G048620.1	Barley	plastid	65.99	59.75
HORVU6Hr1G027500.11	Barley	plastid	36.96	57.39
Zm00001d048502_P002	Maize	cytosol	22.0	56.73
HORVU4Hr1G086160.1	Barley	cytosol	68.25	54.73
TraesCS5D01G238500.1	Wheat	cytosol	35.15	46.55
TraesCS7B01G257700.1	Wheat	plastid	41.5	26.79
VIT_17s0000g10250.t01	Wine grape	cytosol	17.69	20.21

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100250638	wikigene:100250638	MapMan:19.2.3.3.1.1	EMBL:AM461944	ProteinID:CAN74681
ProteinID:CAN74681.1	ProteinID:CBI38768	ProteinID:CBI38768.3	InterPro:CSN1	ncoils:Coil	UniProt:D7U7I9
EMBL:FN596739	GO:GO:0000003	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0006972
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009628	GO:GO:0009646
GO:GO:0009651	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0019538
InterPro:IPR000717	EntrezGene:LOC100250638	wikigene:LOC100250638	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602
PFscan:PS50250	PANTHER:PTHR14145	PANTHER:PTHR14145:SF2	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	TIGR:TC67374	UniParc:UPI0001984E87	ArrayExpress:VIT_15s0048g01980	EnsemblPlantsGene:VIT_15s0048g01980	EnsemblPlants:VIT_15s0048g01980.t01
unigene:Vvi.2785	InterPro:WH_DNA-bd_sf	RefSeq:XP_002272895	RefSeq:XP_002272895.1	:	:

Description

No Description!

Coordinates

chr15:+:16098098..16109673

Molecular Weight (calculated)

50603.4 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.444

Length

441 amino acids

Sequence
(BLAST)

001: MEGEEESSAG AMIDEIYSNG GDAKRNRPII SGEALDIEAY ASLYSGRTKI TRLLFIADRC ENRQMQMEAY RMAYDEIKKG ENTQLYREVV QKIDGRLGPQ
101: YGLDLVWTES VERRADQRKE KLENELNAYR TNLIKESIRM GYNDFGDFYY AHGLLADAFK NYVRTRDYCT TSKHIIHMCL NAILVSIEMG QFTHVTSYVS
201: KAEQTPEALD PVTVAKLRCA AGLAHLEAKK YKLAARKFLE TGAELGNNYT EVIAPQDVAT YGGLCALASF DRTELKNKVI DNLNFRNFLE LVPEVRELIH
301: DFYSSHYASC LDYLGNLKTN LLLDIHLHDH VEMLYNQIRH KALIQYTHPF VSVDLRMMAN AFKTSVAGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQRVLQ TGNEFDRDVR AMLLRANLLK HEYNLRASRK P

Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)

001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L

Arabidopsis Description

CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.