Factsheet for VIT_08s0040g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01
VIT_12s0035g01450.t01
VIT_14s0171g00270.t01
VIT_15s0048g01980.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	VIT_01s0026g02230.t01	AT1G26830.1	12615944
AT2G26990.1	VIT_15s0048g01980.t01	AT3G61140.1	11854419
AT2G26990.1	VIT_15s0048g01980.t01	AT3G61140.1	12615944
AT2G26990.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT2G26990.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT2G26990.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23660_001	Banana	cytosol	94.55	96.07
KRH64921	Soybean	nucleus	95.0	95.22
Os01t0279200-02	Rice	plasma membrane	92.05	92.26
KRG94968	Soybean	cytosol	94.32	92.22
KRH57710	Soybean	nucleus	91.82	92.03
TraesCS3A01G191800.1	Wheat	golgi, unclear	91.59	91.8
TraesCS3D01G194400.1	Wheat	nucleus	91.59	91.8
HORVU3Hr1G039980.8	Barley	nucleus	91.59	91.8
TraesCS3B01G219800.1	Wheat	cytosol	91.36	91.57
KRG94272	Soybean	nucleus	91.36	91.57
Solyc11g062430.1.1	Tomato	cytosol	91.14	91.34
EES02774	Sorghum	cytosol	91.14	91.34
PGSC0003DMT400082384	Potato	cytosol	90.68	90.89
Solyc01g008840.2.1	Tomato	cytosol	89.32	89.52
PGSC0003DMT400072227	Potato	nucleus	89.09	89.29
Solyc10g081150.1.1	Tomato	nucleus	89.09	89.29
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	90.45	88.44
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	90.45	85.78
CDY38538	Canola	cytosol	85.45	85.65
CDX83249	Canola	cytosol	85.23	85.62
Bra000529.1-P	Field mustard	cytosol	85.23	85.42
CDX71478	Canola	cytosol	85.23	85.42
AT2G26990.1	Thale cress	cytosol	85.23	85.42
CDY04472	Canola	cytosol	84.77	84.97
PGSC0003DMT400058484	Potato	cytosol	89.32	82.22
Bra012038.1-P	Field mustard	nucleus	84.09	43.33
VIT_15s0048g00130.t01	Wine grape	cytosol	2.27	26.32
VIT_12s0034g00940.t01	Wine grape	extracellular	6.14	23.48
VIT_01s0182g00070.t01	Wine grape	plastid	18.41	19.19
VIT_14s0030g01670.t01	Wine grape	plastid	19.55	18.78

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100256855	wikigene:100256855	MapMan:19.2.3.3.1.2	ProteinID:CBI32857	ProteinID:CBI32857.3
UniProt:D7TQ50	EMBL:FN596008	GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0045892	InterPro:IPR000717	EntrezGene:LOC100256855	wikigene:LOC100256855	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	TIGR:TC52047	UniParc:UPI0001BE3A11	ArrayExpress:VIT_08s0040g00430	EnsemblPlantsGene:VIT_08s0040g00430	EnsemblPlants:VIT_08s0040g00430.t01
unigene:Vvi.1993	InterPro:WH_DNA-bd_sf	RefSeq:XP_002283810	RefSeq:XP_002283810.1	RefSeq:XP_010653670.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:11382526..11391872

Molecular Weight (calculated)

51606.2 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.602

Length

440 amino acids

Sequence
(BLAST)

001: MPLRDADMED YGFEYSEEEP EEQDVDIENQ YYNSKGLVET DPEGALAGFA EVVRMEPEKA EWGFKALKQT VKLYYRLGKY KEMMEAYRVM LTYIKSAVTR
101: NYSEKCINNI MDFVSGSASQ NFGLLQEFYQ TTLKALEEAK NERLWFKTNL KLCKIWFDMG EYGRMSKILK ELHKSCRRED GTDDQKKGTQ LLEVYAIEIQ
201: MYTETKNNKK LKQLYQKALT IKSAIPHPRI MGIIHECGGK MHMAERQWAD AATDFFEAFK NYDEAGNQRR IQCLKYLVLA NMLMESEVNP FDGQEAKPYK
301: NDPEILAMTN LIAAYQRNEI LEFEKILKSN RRTIMDDLFI RNYIEDLLKN IRTQVLLKLI KPYTRIRIPF ISKELNVPEE DVEQLLVSLI LDNRIQGHID
401: QVNRLLERGD RSKGMKKYAA VEKWNTQLKS LYQTISNRVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.