Factsheet for VIT_01s0182g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01670.t01	Wine grape	plastid	94.31	86.9
Solyc05g013030.1.1	Tomato	plastid	86.02	85.82
PGSC0003DMT400072856	Potato	plastid	85.78	85.58
VIT_12s0034g00940.t01	Wine grape	extracellular	19.67	72.17
VIT_15s0048g00130.t01	Wine grape	cytosol	5.21	57.89
VIT_08s0040g00430.t01	Wine grape	cytosol	19.19	18.41

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100252303	wikigene:100252303	MapMan:19.2.6.2.2.5	UniProt:A5AEB0	EMBL:AM424416
ProteinID:CAN73333	ProteinID:CAN73333.1	ProteinID:CCB58603	ProteinID:CCB58603.1	ncoils:Coil	EMBL:FN596253
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248	InterPro:IPR000717	InterPro:IPR011990
EntrezGene:LOC100252303	wikigene:LOC100252303	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF13	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	TIGR:TC53853
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000151E67D	ArrayExpress:VIT_01s0182g00070	EnsemblPlantsGene:VIT_01s0182g00070	EnsemblPlants:VIT_01s0182g00070.t01	unigene:Vvi.8319
InterPro:WH_DNA-bd_sf	RefSeq:XP_002265609	RefSeq:XP_002265609.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:14046078..14047401

Molecular Weight (calculated)

46984.9 Da

IEP (calculated)

6.135

GRAVY (calculated)

-0.023

Length

422 amino acids

Sequence
(BLAST)

001: MSSSHFTATT DSIAQALEAK TPSEAISILY CIIDSPSSSS EALRIKEQAI TNLSDLLRQE NRAEDLRNLL TQLRPFFSLI PKAKTAKIVR GVIDAVAKIP
101: DTSDLQISLC KDMVAWTRAE KRTFLRQRVE ARLAALLMEN KEYSEALTLL SGLIKEVRRL DDKLLLVDID LLESKLHFSL RNLPKAKAAL TAARTAANAI
201: YVPPAQQGTI DLQSGILHAE EKDYKTAYSY FFEAFEAFNA LEDPRAVFSL KYMLLCKIMV NQADDVAGII SSKAGLQYVG PELDAMKAVA DAHAKRSLKL
301: FETALRDFRA QLEEDPIVHR HLSSLYDTLL EQNLCRLIEP FSKVEIAHIA ELIELPVDHV EKKLSQMILD KKFAGTLDQG AGCLIIFEDP KTDAIYPATL
401: ETISNIGKVV DSLYVRSAKI MA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.