Factsheet for PGSC0003DMT400072856

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013030.1.1	Tomato	plastid	99.76	99.76
VIT_01s0182g00070.t01	Wine grape	plastid	85.58	85.78
GSMUA_Achr9P29490_001	Banana	cytosol	78.96	84.56
KRH61975	Soybean	cytosol, nucleus, plastid	83.92	84.12
KRH52636	Soybean	endoplasmic reticulum	83.69	83.89
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	81.09	81.86
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	80.85	81.62
CDY43320	Canola	extracellular	80.85	81.62
CDX90170	Canola	cytosol, nucleus, plastid	80.85	81.62
Os04t0444600-01	Rice	plasma membrane	81.56	81.18
CDX99790	Canola	cytosol, nucleus, plastid	80.38	81.15
KRH04812	Soybean	nucleus	80.61	81.0
GSMUA_Achr10P...	Banana	cytosol	80.14	80.33
KRH16194	Soybean	cytosol	77.54	80.2
VIT_14s0030g01670.t01	Wine grape	plastid	86.76	80.13
EES17355	Sorghum	plastid	80.61	80.05
OQU81648	Sorghum	nucleus	80.38	79.81
Zm00001d041456_P001	Maize	extracellular	80.38	79.81
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	78.96	79.71
CDY50790	Canola	cytosol	78.96	79.71
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	79.43	79.62
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	79.91	79.34
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	79.91	79.34
Zm00001d003566_P001	Maize	plasma membrane	80.85	79.17
TraesCS2B01G329100.1	Wheat	golgi, unclear	79.67	79.11
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	80.61	78.94
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	79.2	78.82
TraesCS2B01G285600.1	Wheat	golgi	78.96	78.59
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	78.96	78.59
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	78.72	78.35
TraesCS4B01G355700.1	Wheat	nucleus	79.2	75.96
HORVU4Hr1G086010.2	Barley	plastid	80.61	74.62
CDY15648	Canola	cytosol, mitochondrion	49.65	72.16
HORVU2Hr1G077540.2	Barley	cytosol	79.91	68.98
CDX94649	Canola	endoplasmic reticulum	61.23	65.74
Os03t0576400-00	Rice	nucleus	14.89	57.27
PGSC0003DMT400082384	Potato	cytosol	19.39	18.68
PGSC0003DMT400072227	Potato	nucleus	19.39	18.68
PGSC0003DMT400058484	Potato	cytosol	19.62	17.36

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102584171	MapMan:19.2.6.2.2.5	ncoils:Coil	InterPro:IPR000717	UniProt:M1CR31
InterPro:PCI_dom	PFAM:PF01399	EnsemblPlantsGene:PGSC0003DMG400028342	PGSC:PGSC0003DMG400028342	EnsemblPlants:PGSC0003DMT400072856	PFscan:PS50250
PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002949756
InterPro:WH_DNA-bd_sf	RefSeq:XP_006348741.1	SEG:seg	:	:	:

Description

26S proteasome subunit S9 [Source:PGSC_GENE;Acc:PGSC0003DMG400028342]

Coordinates

chr5:-:107703..111596

Molecular Weight (calculated)

47034.9 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.061

Length

423 amino acids

Sequence
(BLAST)

001: MASSYLPATT DSLAQASEAT TPSEAISILY RILENPSSSS EALRIKEQAI FNLSDLLSQE KRAEDLQKLL VQLRPFFSLI PKAKTAKIVN KGIVDAVAKI
101: PGTSDLQITL CKDIVQWARS EKRTFLRQRV EAKLAALLME NKEYSEALTL LSGLIKEVRR LDDKLLLVEI DLLESQLHFS LRNLPKAKAA LTAARTAANA
201: IYVPPAQQGA IDLQSGILHA EEKDYKTAYS YFYEAFEAFN ALENPQALYS LKYMLLCKIM VSQADDVAGI ISTKVGLNYQ GPEVDAMKAV ADAHSKRSLK
301: LFETSLRNFK AQLDEDPIVH RHLSSLYDTL MEQNLCRLIE PFSRVEIAHI AELIELPADH VEKKLSQMIL DKKFAGTLDQ GAGCLVIFED PKQDAIYPAT
401: LETISNMGKV VDSLFVRSSK IVA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.