CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16194	Soybean	cytosol	89.55	92.18
KRH61975	Soybean	cytosol, nucleus, plastid	91.69	91.47
KRH52636	Soybean	endoplasmic reticulum	90.97	90.76
GSMUA_Achr9P29490_001	Banana	cytosol	82.9	88.35
CDX90170	Canola	cytosol, nucleus, plastid	84.8	85.2
CDX99790	Canola	cytosol, nucleus, plastid	84.8	85.2
CDY43320	Canola	extracellular	84.8	85.2
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	84.56	84.96
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	84.56	84.96
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	84.32	84.73
CDY50790	Canola	cytosol	84.09	84.49
Os04t0444600-01	Rice	plasma membrane	83.85	83.06
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	82.66	82.46
EES17355	Sorghum	plastid	83.14	82.16
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	83.14	82.16
Zm00001d041456_P001	Maize	extracellular	82.9	81.92
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	82.9	81.92
OQU81648	Sorghum	nucleus	82.9	81.92
TraesCS2B01G329100.1	Wheat	golgi, unclear	82.66	81.69
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	82.19	81.41
TraesCS2B01G285600.1	Wheat	golgi	82.19	81.41
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	82.19	81.41
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	81.95	81.18
Zm00001d003566_P001	Maize	plasma membrane	83.14	81.02
Solyc05g013030.1.1	Tomato	plastid	81.24	80.85
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	82.9	80.79
PGSC0003DMT400072856	Potato	plastid	81.0	80.61
GSMUA_Achr10P...	Banana	cytosol	80.05	79.86
TraesCS4B01G355700.1	Wheat	nucleus	81.47	77.78
HORVU4Hr1G086010.2	Barley	plastid	82.42	75.93
CDY15648	Canola	cytosol, mitochondrion	51.31	74.23
HORVU2Hr1G077540.2	Barley	cytosol	82.9	71.22
VIT_12s0034g00940.t01	Wine grape	extracellular	19.0	69.57
CDX94649	Canola	endoplasmic reticulum	62.23	66.5
Os03t0576400-00	Rice	nucleus	15.68	60.0
VIT_15s0048g00130.t01	Wine grape	cytosol	4.51	50.0
KRH64921	Soybean	nucleus	20.43	19.59
KRH57710	Soybean	nucleus	20.19	19.36
KRG94272	Soybean	nucleus	19.95	19.13
KRG94968	Soybean	cytosol	20.43	19.11

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100777365	MapMan:19.2.6.2.2.5	EMBL:ACUP02010550	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G188600
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248	UniProt:I1MW74	InterPro:IPR000717
InterPro:IPR011990	EnsemblPlants:KRH04812	ProteinID:KRH04812	ProteinID:KRH04812.1	InterPro:PCI_dom	PFAM:PF01399
PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233F37D	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:24792057..24793840

Molecular Weight (calculated)

47067.1 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.051

Length

421 amino acids

Sequence
(BLAST)

001: MSSFLPASAE SLDLAVEAKD PSESISILYQ VLDDPSSSPD ALRMKEQAIT NLTEHLREQN RAEDLHSLLT QLRPFFSLIP KAKTAKIVRG IIDTVAKIPG
101: TSDLQITLCK EMMQWTRAEK RTFLRQRVEA RLAALLMESK DYSEALTLLS GLVKEVRRLD DKLLLVDIDL LESKLHFSLR NLPKAKAALT AARTAANAIY
201: VPPAQQGAID LQSGILHAEE KDYKTAYSYF FEAFESFNAL DDPKAVFSLK YMLLCKIMVS QADDVAGIIS SKAGVQYLGP DLDAMKAIAD AHSKRSLKLF
301: EIALRDYKAQ LEEDPIVHRH LSSLYDSLME QNLWRLIEPY ARVEIAHIAE LIKLPVDHVE QKLSQMILDK KFVGTLDQGA GCLVIFDDPK TDAIYPATLE
401: TIFNIGKVVD SLYVRSAKIV A

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.