Factsheet for Os04t0444600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81648	Sorghum	nucleus	96.71	96.48
Zm00001d003566_P001	Maize	plasma membrane	96.71	95.14
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	96.47	94.91
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	95.06	94.84
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	94.12	94.79
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	94.82	94.6
TraesCS2B01G329100.1	Wheat	golgi, unclear	94.12	93.9
TraesCS4B01G355700.1	Wheat	nucleus	93.65	90.25
GSMUA_Achr9P29490_001	Banana	cytosol	82.35	88.61
HORVU4Hr1G086010.2	Barley	plastid	94.12	87.53
KRH61975	Soybean	cytosol, nucleus, plastid	86.82	87.44
KRH52636	Soybean	endoplasmic reticulum	86.35	86.97
GSMUA_Achr10P...	Banana	cytosol	84.24	84.83
CDY43320	Canola	extracellular	83.53	84.73
CDX90170	Canola	cytosol, nucleus, plastid	83.06	84.25
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	83.06	84.25
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	82.82	84.01
KRH04812	Soybean	nucleus	83.06	83.85
CDX99790	Canola	cytosol, nucleus, plastid	82.59	83.77
Os03t0576400-00	Rice	nucleus	21.65	83.64
CDY50790	Canola	cytosol	82.35	83.53
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	82.35	83.53
HORVU2Hr1G077540.2	Barley	cytosol	95.06	82.45
KRH16194	Soybean	cytosol	78.82	81.91
Solyc05g013030.1.1	Tomato	plastid	81.41	81.8
PGSC0003DMT400072856	Potato	plastid	81.18	81.56
CDY15648	Canola	cytosol, mitochondrion	50.59	73.88
VIT_12s0034g00940.t01	Wine grape	extracellular	19.29	71.3
CDX94649	Canola	endoplasmic reticulum	61.65	66.5
VIT_15s0048g00130.t01	Wine grape	cytosol	5.18	57.89
Os01t0279200-02	Rice	plasma membrane	20.47	19.82

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	EntrezGene:4335951	EMBL:AK064788	ProteinID:BAF14808.1	ProteinID:BAS89379.1
ProteinID:CAE02431.2	ProteinID:CAE02442.2	ncoils:Coil	ProteinID:EAZ30861.1	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043248	InterPro:IPR000717	InterPro:IPR011990	EnsemblPlantsGene:Os04g0444600	EnsemblPlants:Os04t0444600-01
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	UniProt:Q7X5X9
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00001B127B
InterPro:WH_DNA-bd_sf	RefSeq:XP_015636529.1	SEG:seg	:	:	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6Similar to 26S proteasome subunit RPN6a (Fragment). (Os04t0444600-01);Similar to 26S proteasome non-ATPase regulatory subunit 11. (Os04t0444600-02)

Coordinates

chr4:+:22168354..22170852

Molecular Weight (calculated)

47599.7 Da

IEP (calculated)

6.044

GRAVY (calculated)

-0.102

Length

425 amino acids

Sequence
(BLAST)

001: MSSMESSYLP ATTESIAKAQ EAKDASESIS ILYRVLQDPS SSAEALRTKE LAITNLTNYL TKENRAEELR NLLTQLRPFF SLIPKAKTAK IVRGIIDAVA
101: KIPGTSELQI SLCKEMVEWT RAEKRTFLRQ RVEARLAALL LENQEYTEAL TLLTGLIKEV RRLDDKLLLV DIDLLESKLH FSLRNLPKAK ASLTAARTAA
201: NAIYVPPAQQ GTIDLQSGIL HAEEKDYKTA YSYFFEAFEA FSALEDPKAI FSLKYMLLCK IMVNQADDVA GIISSKAGLK YLGPDVDAMK AVADAYSKRS
301: LKYFETALRD YKSQLEEDPI VHRHLSSLYD TLLEQNLCRL IEPYSRVEIA HIAEMIELPV DHVEKKLSQM ILDKKFAGTL DQGAGCLIIF EDPKTEAIFP
401: ATLETISNVG KVVDSLYMRS AKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.