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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90170 Canola cytosol, nucleus, plastid 97.85 97.85
Bra010849.1-P Field mustard cytosol, nucleus, plastid 97.61 97.61
CDY43320 Canola extracellular 97.61 97.61
CDX99790 Canola cytosol, nucleus, plastid 97.37 97.37
Bra032291.1-P Field mustard cytosol, nucleus, plastid 96.18 96.18
CDY50790 Canola cytosol 95.94 95.94
GSMUA_Achr9P29490_001 Banana cytosol 84.49 89.62
KRH61975 Soybean cytosol, nucleus, plastid 87.59 86.97
KRH52636 Soybean endoplasmic reticulum 87.11 86.49
KRH04812 Soybean nucleus 84.96 84.56
KRH16194 Soybean cytosol 81.38 83.37
Os04t0444600-01 Rice plasma membrane 84.25 83.06
CDY15648 Canola cytosol, mitochondrion 57.52 82.82
TraesCS2D01G310600.1 Wheat cytosol, nucleus, plastid 83.29 82.7
TraesCS5A01G524900.1 Wheat cytosol, nucleus, plastid 83.77 82.39
TraesCS2B01G329100.1 Wheat golgi, unclear 83.77 82.39
EES17355 Sorghum plastid 83.53 82.16
TraesCS4D01G349100.1 Wheat cytosol, nucleus, plastid 83.29 81.92
GSMUA_Achr10P... Banana cytosol 82.34 81.75
Zm00001d041456_P001 Maize extracellular 83.05 81.69
TraesCS2B01G285600.1 Wheat golgi 82.82 81.65
TraesCS2D01G265800.1 Wheat cytosol, nucleus, plastid 82.82 81.65
HORVU2Hr1G064590.1 Barley cytosol, nucleus, plastid 82.82 81.65
TraesCS2A01G257000.1 Wheat cytosol, nucleus, plastid 82.58 81.41
Solyc05g013030.1.1 Tomato plastid 82.1 81.32
OQU81648 Sorghum nucleus 82.58 81.22
PGSC0003DMT400072856 Potato plastid 81.86 81.09
Zm00001d003566_P001 Maize plasma membrane 83.05 80.56
Zm00001d003567_P001 Maize cytosol, nucleus, plastid 82.82 80.32
TraesCS4B01G355700.1 Wheat nucleus 81.86 77.78
CDX94649 Canola endoplasmic reticulum 72.08 76.65
HORVU4Hr1G086010.2 Barley plastid 83.29 76.37
VIT_12s0034g00940.t01 Wine grape extracellular 19.81 72.17
HORVU2Hr1G077540.2 Barley cytosol 83.29 71.22
VIT_15s0048g00130.t01 Wine grape cytosol 5.01 55.26
Os03t0576400-00 Rice nucleus 14.08 53.64
AT2G26990.1 Thale cress cytosol 18.62 17.77
Protein Annotations
Gene3D:1.25.40.570MapMan:19.2.6.2.2.5EntrezGene:839789UniProt:A0A178WAE7ProteinID:AAF88122.1ProteinID:AEE31050.1
EMBL:AF083890EMBL:AF370203ProteinID:ANM61082.1ArrayExpress:AT1G29150EnsemblPlantsGene:AT1G29150RefSeq:AT1G29150
TAIR:AT1G29150RefSeq:AT1G29150-TAIR-GEnsemblPlants:AT1G29150.1TAIR:AT1G29150.1Symbol:ATS9EMBL:AY056311
EMBL:AY230834EMBL:AY230835EMBL:AY230836EMBL:AY230837ncoils:CoilGO:GO:0000502
GO:GO:0003674GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0008150GO:GO:0008152
GO:GO:0008541GO:GO:0009056GO:GO:0009506GO:GO:0009987GO:GO:0016043GO:GO:0019538
GO:GO:0030163GO:GO:0043248GO:GO:0046686InterPro:IPR000717InterPro:IPR011990RefSeq:NP_001323322.1
RefSeq:NP_174210.1ProteinID:OAP15064.1InterPro:PCI_domPFAM:PF01399PO:PO:0000005PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PFscan:PS50250PANTHER:PTHR10678PANTHER:PTHR10678:SF14UniProt:Q9LP45
SMART:SM00088SMART:SM00753SUPFAM:SSF46785SUPFAM:SSF48452InterPro:TPR-like_helical_dom_sfUniParc:UPI000009F6DF
InterPro:WH_DNA-bd_sfSEG:seg::::
Description
RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
Coordinates
chr1:+:10180302..10182788
Molecular Weight (calculated)
46751.9 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.039
Length
419 amino acids
Sequence
(BLAST)
001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.