Factsheet for TraesCS4B01G355700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	94.33	97.65
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	93.88	97.18
TraesCS2B01G329100.1	Wheat	golgi, unclear	91.61	94.84
Os04t0444600-01	Rice	plasma membrane	90.25	93.65
OQU81648	Sorghum	nucleus	88.89	92.02
Zm00001d003566_P001	Maize	plasma membrane	89.34	91.2
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	89.12	90.97
TraesCS2B01G285600.1	Wheat	golgi	87.53	90.82
HORVU4Hr1G086010.2	Barley	plastid	92.52	89.28
GSMUA_Achr9P29490_001	Banana	cytosol	77.55	86.58
KRH61975	Soybean	cytosol, nucleus, plastid	80.95	84.6
KRH52636	Soybean	endoplasmic reticulum	80.5	84.12
CDY43320	Canola	extracellular	78.46	82.58
CDX90170	Canola	cytosol, nucleus, plastid	78.0	82.1
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	77.78	81.86
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	77.78	81.86
GSMUA_Achr10P...	Banana	cytosol	78.23	81.75
KRH04812	Soybean	nucleus	77.78	81.47
CDX99790	Canola	cytosol, nucleus, plastid	77.32	81.38
CDY50790	Canola	cytosol	76.87	80.91
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	76.87	80.91
KRH16194	Soybean	cytosol	74.38	80.2
Solyc05g013030.1.1	Tomato	plastid	76.19	79.43
PGSC0003DMT400072856	Potato	plastid	75.96	79.2
Os03t0576400-00	Rice	nucleus	19.27	77.27
CDY15648	Canola	cytosol, mitochondrion	48.53	73.54
VIT_12s0034g00940.t01	Wine grape	extracellular	18.59	71.3
CDX94649	Canola	endoplasmic reticulum	56.92	63.71
VIT_15s0048g00130.t01	Wine grape	cytosol	4.99	57.89
TraesCS3B01G219800.1	Wheat	cytosol	18.82	18.91

Protein Annotations

EnsemblPlants:TraesCS4B01G355700.1	EnsemblPlantsGene:TraesCS4B01G355700	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000717	InterPro:IPR011990	InterPro:PCI_dom	InterPro:TPR-like_helical_dom_sf	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	PFAM:PF01399	PFscan:PS50250	SEG:seg	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	MapMan:19.2.6.2.2.5	:	:

Description

No Description!

Coordinates

chr4B:-:646658051..646659685

Molecular Weight (calculated)

49797.1 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.147

Length

441 amino acids

Sequence
(BLAST)

001: MSSAMESSYL PATTESIEKA QEAKDASESI SILYRLIQDP SSSADALRTK ELAITNLTNY LTKENRAEDL RNLLTQLRPF FSLIPKAKTA KIVRGIIDAV
101: AKIPGTSDLQ ISLCKEMVEW TRAEKRTFLR QRVEARLAAL LLENQEYTEA LTLLTGLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPAQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFNALDDPRA ISSLKYMLLC KIMVNQADDV AGIISSKASL KYVGSDVDAM KAVADAYSKR
301: SLKYFETALR DFKAQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI EHVAQMIELP VDHVEKKLSQ MILDKKFAGT LDQGAGCLII FEEQKTEAIF
401: PATLETISNV GKVVDSLYMR YASYTMLRGW MAFHWHRRSI C

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.