CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003566_P001	Maize	plasma membrane	98.36	96.99
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	98.12	96.76
Os04t0444600-01	Rice	plasma membrane	96.48	96.71
EES17355	Sorghum	plastid	94.6	94.6
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	93.43	93.43
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	93.19	93.19
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	92.02	92.89
TraesCS2B01G329100.1	Wheat	golgi, unclear	92.49	92.49
TraesCS4B01G355700.1	Wheat	nucleus	92.02	88.89
GSMUA_Achr9P29490_001	Banana	cytosol	81.22	87.59
KRH61975	Soybean	cytosol, nucleus, plastid	85.45	86.26
HORVU4Hr1G086010.2	Barley	plastid	92.49	86.21
KRH52636	Soybean	endoplasmic reticulum	84.98	85.78
CDY43320	Canola	extracellular	81.69	83.05
CDX90170	Canola	cytosol, nucleus, plastid	81.69	83.05
GSMUA_Achr10P...	Banana	cytosol	82.16	82.94
KRH04812	Soybean	nucleus	81.92	82.9
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	81.46	82.82
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	81.22	82.58
CDX99790	Canola	cytosol, nucleus, plastid	80.75	82.1
CDY50790	Canola	cytosol	80.52	81.86
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	80.52	81.86
KRH16194	Soybean	cytosol	78.17	81.42
HORVU2Hr1G077540.2	Barley	cytosol	93.43	81.22
Solyc05g013030.1.1	Tomato	plastid	80.05	80.61
PGSC0003DMT400072856	Potato	plastid	79.81	80.38
Os03t0576400-00	Rice	nucleus	19.48	75.45
CDY15648	Canola	cytosol, mitochondrion	50.0	73.2
VIT_12s0034g00940.t01	Wine grape	extracellular	19.25	71.3
CDX94649	Canola	endoplasmic reticulum	60.33	65.23
VIT_15s0048g00130.t01	Wine grape	cytosol	5.16	57.89
EES02774	Sorghum	cytosol	20.66	20.05

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	EntrezGene:8080357	UniProt:A0A1Z5RD40	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000717	InterPro:IPR011990	EnsemblPlants:OQU81648	ProteinID:OQU81648
ProteinID:OQU81648.1	ProteinID:OQU81649.1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3006G092800	SUPFAM:SSF46785	SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A86D6C	InterPro:WH_DNA-bd_sf	RefSeq:XP_002446538.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:46292811..46296253

Molecular Weight (calculated)

47640.6 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.098

Length

426 amino acids

Sequence
(BLAST)

001: MSSSVESSYL PATTESLAKA QEAKDATESI SILYRVIQDP SSSADALRTK EVAITNLTNY LTKENRAEEL RNLLTQLRPF FAVIPKAKTA KIVRGIIDAV
101: AKIPGTSSLQ ISLCKEMVEW TRSEKRTFLR QRVEARLAAL LLENQEYTEA LTLLTSLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPAQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFSALEDPKA IFSLKYMLLC KIMVNQADDV AGIISSKAGL KYLGPDVDAM KAVADAYSKR
301: SLKYFETALR DYKSQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI AHIAEMIELP VDHVEKKLSQ MILDKKFAGT LDQGAGCLII FEDPKTEEIF
401: PATLETISNV GKVVDSLYVR SAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.