CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94649	Canola	endoplasmic reticulum	83.85	61.93
VIT_12s0034g00940.t01	Wine grape	extracellular	23.37	59.13
CDX99790	Canola	cytosol, nucleus, plastid	83.16	57.76
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	82.82	57.52
CDY50790	Canola	cytosol	82.82	57.52
CDY43320	Canola	extracellular	82.82	57.52
CDX90170	Canola	cytosol, nucleus, plastid	82.82	57.52
GSMUA_Achr9P29490_001	Banana	cytosol	76.29	56.2
KRH61975	Soybean	cytosol, nucleus, plastid	76.63	52.84
KRH52636	Soybean	endoplasmic reticulum	76.29	52.61
KRH04812	Soybean	nucleus	74.23	51.31
Os04t0444600-01	Rice	plasma membrane	73.88	50.59
TraesCS2B01G285600.1	Wheat	golgi	73.54	50.35
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	73.54	50.35
EES17355	Sorghum	plastid	73.54	50.23
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	73.2	50.12
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	73.2	50.12
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	72.51	50.0
VIT_15s0048g00130.t01	Wine grape	cytosol	6.53	50.0
Zm00001d041456_P001	Maize	extracellular	73.2	50.0
OQU81648	Sorghum	nucleus	73.2	50.0
Solyc05g013030.1.1	Tomato	plastid	72.51	49.88
KRH16194	Soybean	cytosol	70.1	49.88
Zm00001d003566_P001	Maize	plasma membrane	73.88	49.77
TraesCS2B01G329100.1	Wheat	golgi, unclear	72.85	49.77
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	72.85	49.77
PGSC0003DMT400072856	Potato	plastid	72.16	49.65
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	73.54	49.54
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	72.51	49.53
GSMUA_Achr10P...	Banana	cytosol	70.79	48.82
TraesCS4B01G355700.1	Wheat	nucleus	73.54	48.53
HORVU4Hr1G086010.2	Barley	plastid	73.54	46.83
HORVU2Hr1G077540.2	Barley	cytosol	72.85	43.27
CDX83249	Canola	cytosol	18.9	12.56
CDY04472	Canola	cytosol	18.9	12.53
CDX71478	Canola	cytosol	18.9	12.53
CDY38538	Canola	cytosol	18.9	12.53
CDY04471	Canola	nucleus	11.68	9.24
Os03t0576400-00	Rice	nucleus	0.69	1.82

Protein Annotations

EnsemblPlants:CDY15648	EnsemblPlantsGene:GSBRNA2T00089848001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
ncoils:Coil	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	PFAM:PF01399	ProteinID:CDY15648	ProteinID:CDY15648.1
SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EE5EE2	UniProt:A0A078FTK9
MapMan:19.2.6.2.2.5	:	:	:	:	:

Description

BnaA07g08190DBnaA07g08190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTK9]

Coordinates

chrLK032056:-:144335..145267

Molecular Weight (calculated)

33265.3 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.127

Length

291 amino acids

Sequence
(BLAST)

001: MVEWTRAEKR TFLRQRMEAR LAALLMENKE YVEALALLST LVKEFRRLDD KLLLVDIDLL ESKLHFSLRN LPKAKAAPTA ARTAANAIYY PPAQQGTIDF
101: QSGILNAEEK YCKTGYKYFF KGFESFNALG NSRAVSTFKY MLFCKIMVSQ ADDVVGIISS KAGLQSLKLF ENAIYDYKAE IEDDPVIHRH LSSLYDTLLE
201: QNRCRLIEPF SRVEIAHIAE LIELPIDHVE KLSQMILDKK FTGTLDQGAG CLIIFEDLKA DAIYSATLDT IATWRRLLRA FMSGQPKSWR E

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.