CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	99.76	99.76
CDX99790	Canola	cytosol, nucleus, plastid	98.33	98.33
CDX90170	Canola	cytosol, nucleus, plastid	96.66	96.66
CDY43320	Canola	extracellular	96.42	96.42
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	95.94	95.94
GSMUA_Achr9P29490_001	Banana	cytosol	83.53	88.61
KRH61975	Soybean	cytosol, nucleus, plastid	86.16	85.55
KRH52636	Soybean	endoplasmic reticulum	85.68	85.07
KRH04812	Soybean	nucleus	84.49	84.09
KRH16194	Soybean	cytosol	80.91	82.89
CDY15648	Canola	cytosol, mitochondrion	57.52	82.82
Os04t0444600-01	Rice	plasma membrane	83.53	82.35
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	82.58	81.99
TraesCS2B01G329100.1	Wheat	golgi, unclear	83.05	81.69
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	82.82	81.46
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	82.58	81.22
EES17355	Sorghum	plastid	82.34	80.99
Zm00001d041456_P001	Maize	extracellular	81.86	80.52
OQU81648	Sorghum	nucleus	81.86	80.52
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	81.15	80.0
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	80.91	79.76
TraesCS2B01G285600.1	Wheat	golgi	80.91	79.76
GSMUA_Achr10P...	Banana	cytosol	80.19	79.62
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	80.67	79.53
Zm00001d003566_P001	Maize	plasma membrane	81.86	79.4
Solyc05g013030.1.1	Tomato	plastid	79.95	79.2
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	81.62	79.17
PGSC0003DMT400072856	Potato	plastid	79.71	78.96
CDX94649	Canola	endoplasmic reticulum	72.55	77.16
TraesCS4B01G355700.1	Wheat	nucleus	80.91	76.87
HORVU4Hr1G086010.2	Barley	plastid	82.34	75.49
VIT_12s0034g00940.t01	Wine grape	extracellular	19.57	71.3
HORVU2Hr1G077540.2	Barley	cytosol	82.58	70.61
VIT_15s0048g00130.t01	Wine grape	cytosol	5.25	57.89
Os03t0576400-00	Rice	nucleus	14.32	54.55
CDX83249	Canola	cytosol	18.14	17.35
CDY04472	Canola	cytosol	17.9	17.08
CDY38538	Canola	cytosol	17.9	17.08
CDX71478	Canola	cytosol	17.9	17.08
CDY04471	Canola	nucleus	10.98	12.5

Protein Annotations

EnsemblPlants:CDY50790	EnsemblPlantsGene:GSBRNA2T00097491001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
ncoils:Coil	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	PFAM:PF01399	PFscan:PS50250	ProteinID:CDY50790
ProteinID:CDY50790.1	SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EDF876
UniProt:A0A078IID8	MapMan:19.2.6.2.2.5	:	:	:	:

Description

BnaA09g54190DBnaA09g54190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IID8]

Coordinates

chrLK032939:-:96819..98775

Molecular Weight (calculated)

46672.8 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.008

Length

419 amino acids

Sequence
(BLAST)

001: MVSFPATTET ISVALEANSS EAIQILYQVL EDPSSSPEAL RVKEQAITNL CERLTEEKRG EDLRTLLTKL RPFFSLIPKA KTAKIVRGII DALAKIPGTT
101: HLQITLCKEM VAWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLTTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD SRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPVDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLDTI
401: ANMEKVVDSL YVRSAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.