CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90170	Canola	cytosol, nucleus, plastid	99.28	99.28
CDX99790	Canola	cytosol, nucleus, plastid	97.85	97.85
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	97.61	97.61
CDY50790	Canola	cytosol	96.42	96.42
GSMUA_Achr9P29490_001	Banana	cytosol	84.49	89.62
KRH61975	Soybean	cytosol, nucleus, plastid	87.59	86.97
KRH52636	Soybean	endoplasmic reticulum	87.11	86.49
KRH04812	Soybean	nucleus	85.2	84.8
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	84.25	83.65
KRH16194	Soybean	cytosol	81.62	83.62
Os04t0444600-01	Rice	plasma membrane	84.73	83.53
TraesCS2B01G329100.1	Wheat	golgi, unclear	84.73	83.33
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	84.49	83.1
CDY15648	Canola	cytosol, mitochondrion	57.52	82.82
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	84.01	82.63
EES17355	Sorghum	plastid	83.77	82.39
Zm00001d041456_P001	Maize	extracellular	83.29	81.92
OQU81648	Sorghum	nucleus	83.05	81.69
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	82.82	81.65
TraesCS2B01G285600.1	Wheat	golgi	82.82	81.65
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	82.82	81.65
GSMUA_Achr10P...	Banana	cytosol	82.1	81.52
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	82.58	81.41
Solyc05g013030.1.1	Tomato	plastid	81.86	81.09
PGSC0003DMT400072856	Potato	plastid	81.62	80.85
Zm00001d003566_P001	Maize	plasma membrane	83.29	80.79
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	83.05	80.56
TraesCS4B01G355700.1	Wheat	nucleus	82.58	78.46
HORVU4Hr1G086010.2	Barley	plastid	83.77	76.81
CDX94649	Canola	endoplasmic reticulum	71.6	76.14
VIT_12s0034g00940.t01	Wine grape	extracellular	20.05	73.04
HORVU2Hr1G077540.2	Barley	cytosol	84.25	72.04
VIT_15s0048g00130.t01	Wine grape	cytosol	5.25	57.89
Os03t0576400-00	Rice	nucleus	14.8	56.36
CDX83249	Canola	cytosol	18.38	17.58
CDX71478	Canola	cytosol	18.14	17.31
CDY04472	Canola	cytosol	18.14	17.31
CDY38538	Canola	cytosol	18.14	17.31
CDY04471	Canola	nucleus	10.5	11.96

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	UniProt:A0A078HXQ5	EnsemblPlants:CDY43320	ProteinID:CDY43320	ProteinID:CDY43320.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00076368001	InterPro:IPR000717
InterPro:IPR011990	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF2D05
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC03g58920DBnaC03g58920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXQ5]

Coordinates

chrLK032552:+:71116..73164

Molecular Weight (calculated)

46678.7 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.061

Length

419 amino acids

Sequence
(BLAST)

001: MVSYPATTES ISLAQEANNS EAIQILYQVL EDPSSSPEAL RIKEQAITNL CDRLTEEKRG EDLRTLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIGHIAELI GLPVDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLDTI
401: ANMGKVVDSL YVRSAKIMS

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.