Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15648 | Canola | cytosol, mitochondrion | 9.24 | 11.68 |
| CDX99790 | Canola | cytosol, nucleus, plastid | 12.5 | 10.98 |
| CDY50790 | Canola | cytosol | 12.5 | 10.98 |
| CDX90170 | Canola | cytosol, nucleus, plastid | 12.23 | 10.74 |
| CDX94649 | Canola | endoplasmic reticulum | 11.41 | 10.66 |
| CDY43320 | Canola | extracellular | 11.96 | 10.5 |
| CDY04472 | Canola | cytosol | 11.96 | 10.02 |
| CDX71478 | Canola | cytosol | 11.68 | 9.79 |
| CDY38538 | Canola | cytosol | 11.68 | 9.79 |
| CDX83249 | Canola | cytosol | 11.41 | 9.59 |
Protein Annotations
| EnsemblPlants:CDY04471 | EnsemblPlantsGene:GSBRNA2T00118629001 | Gene3D:1.10.10.60 | GO:A0A078ETE2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF540 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY04471 | ProteinID:CDY04471.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF28EE | MapMan:15.5.2.1 | : |
Description
BnaA07g12970D
Coordinates
chrLK031955:-:163878..165201
Molecular Weight (calculated)
41270.0 Da
IEP (calculated)
4.895
GRAVY (calculated)
-0.746
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKVLHDSES GQDFAVEKTF HKGPWTSAED QLLTAYVDKH GEGNWNAVQK HSGLSRCGKS CRLRWVNHLR PSLKKGGFTD KEEQRVIELH ASMGNKWARM
101: AAQLPGRTDN EIKNFWNTRL KKLQRLGLPI YPDEVREQAM NAAVQNGQNS DHSQESLEPD CLEIPEFDFK YLQLNNYQSV LLRNVPMGSP YMSPPKRKRV
201: REPETDFLDT GGYAANEQSG QLWNYPFVES NAAKYSSPSE KLELPSFQCC DPLGDWETQH SNPMLAVESD STLVESPLTD CPSSGLLESV VYGSSGEKQA
301: TNSTDPDSPL LLQSSLFGHI ELTPAFANNT ETDMVPFGPT SSSERLTSSL ESSDWIRQLL GEDRDYTK
101: AAQLPGRTDN EIKNFWNTRL KKLQRLGLPI YPDEVREQAM NAAVQNGQNS DHSQESLEPD CLEIPEFDFK YLQLNNYQSV LLRNVPMGSP YMSPPKRKRV
201: REPETDFLDT GGYAANEQSG QLWNYPFVES NAAKYSSPSE KLELPSFQCC DPLGDWETQH SNPMLAVESD STLVESPLTD CPSSGLLESV VYGSSGEKQA
301: TNSTDPDSPL LLQSSLFGHI ELTPAFANNT ETDMVPFGPT SSSERLTSSL ESSDWIRQLL GEDRDYTK
001: MGKVRQDSGS DDDNSIKKSF TKGPWTQAED NLLIAYVDKH GDGNWNAVQN NSGLSRCGKS CRLRWVNHLR PDLKKGAFTE KEEKRVIELH ALLGNKWARM
101: AEELPGRTDN EIKNFWNTRL KRLQRLGLPV YPDEVREHAM NAATHSGLNT DSLDGHHSQE YMEADTVEIP EVDFEHLPLN RSSSYYQSML RHVPPTNVFV
201: RQKPCFFQPP NVYNLIPPSP YMSTGKRPRE PETAFPCPGG YTMNEQSPRL WNYPFVENVS EQLPDSHLLG NAAYSSPPGP LVHGVENFEF PSFQYHEEPG
301: GWGADQPNPM PEHESDNTLV QSPLTAQTPS DCPSSSLYDG LLESVVYGSS GEKPATDTDS ESSLFQSFTP ANENITGKTC FLTLYALHAL HCLCNQFKKS
401: PLLHLHDKLN WCNKFRFNSF KSGTHIL
101: AEELPGRTDN EIKNFWNTRL KRLQRLGLPV YPDEVREHAM NAATHSGLNT DSLDGHHSQE YMEADTVEIP EVDFEHLPLN RSSSYYQSML RHVPPTNVFV
201: RQKPCFFQPP NVYNLIPPSP YMSTGKRPRE PETAFPCPGG YTMNEQSPRL WNYPFVENVS EQLPDSHLLG NAAYSSPPGP LVHGVENFEF PSFQYHEEPG
301: GWGADQPNPM PEHESDNTLV QSPLTAQTPS DCPSSSLYDG LLESVVYGSS GEKPATDTDS ESSLFQSFTP ANENITGKTC FLTLYALHAL HCLCNQFKKS
401: PLLHLHDKLN WCNKFRFNSF KSGTHIL
Arabidopsis Description
AtMYB81Myb domain protein 81 [Source:UniProtKB/TrEMBL;Acc:Q9SLH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.