CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	99.76	99.76
CDY43320	Canola	extracellular	99.28	99.28
CDX99790	Canola	cytosol, nucleus, plastid	98.09	98.09
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	97.85	97.85
CDY50790	Canola	cytosol	96.66	96.66
GSMUA_Achr9P29490_001	Banana	cytosol	84.49	89.62
KRH61975	Soybean	cytosol, nucleus, plastid	87.59	86.97
KRH52636	Soybean	endoplasmic reticulum	87.11	86.49
KRH04812	Soybean	nucleus	85.2	84.8
KRH16194	Soybean	cytosol	81.62	83.62
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	83.77	83.18
Os04t0444600-01	Rice	plasma membrane	84.25	83.06
TraesCS2B01G329100.1	Wheat	golgi, unclear	84.25	82.86
CDY15648	Canola	cytosol, mitochondrion	57.52	82.82
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	84.01	82.63
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	83.53	82.16
EES17355	Sorghum	plastid	83.29	81.92
Zm00001d041456_P001	Maize	extracellular	83.05	81.69
OQU81648	Sorghum	nucleus	83.05	81.69
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	82.34	81.18
TraesCS2B01G285600.1	Wheat	golgi	82.34	81.18
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	82.34	81.18
Solyc05g013030.1.1	Tomato	plastid	81.86	81.09
GSMUA_Achr10P...	Banana	cytosol	81.62	81.04
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	82.1	80.94
PGSC0003DMT400072856	Potato	plastid	81.62	80.85
Zm00001d003566_P001	Maize	plasma membrane	83.29	80.79
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	83.05	80.56
TraesCS4B01G355700.1	Wheat	nucleus	82.1	78.0
CDX94649	Canola	endoplasmic reticulum	71.84	76.4
HORVU4Hr1G086010.2	Barley	plastid	83.29	76.37
VIT_12s0034g00940.t01	Wine grape	extracellular	20.05	73.04
HORVU2Hr1G077540.2	Barley	cytosol	83.77	71.63
VIT_15s0048g00130.t01	Wine grape	cytosol	5.25	57.89
Os03t0576400-00	Rice	nucleus	14.32	54.55
CDX83249	Canola	cytosol	18.38	17.58
CDY04472	Canola	cytosol	18.14	17.31
CDX71478	Canola	cytosol	18.14	17.31
CDY38538	Canola	cytosol	18.14	17.31
CDY04471	Canola	nucleus	10.74	12.23

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	EnsemblPlants:CDX90170	ProteinID:CDX90170	ProteinID:CDX90170.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00150716001	InterPro:IPR000717	InterPro:IPR011990
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE6B49	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA08g18140D

Coordinates

chrLK031862:+:458737..460751

Molecular Weight (calculated)

46665.7 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.056

Length

419 amino acids

Sequence
(BLAST)

001: MVSYPATTET LSLAQEANSS EAIQILYQVL EDPSSSPEAL RIKEQAITNL CDRLTEEKRG EDLRTLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIGHIAELI GLPVDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLDTI
401: ANMGKVVDSL YVRSAKIMS

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.