Factsheet for TraesCS5A01G524900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	98.59	98.59
Os04t0444600-01	Rice	plasma membrane	94.84	95.06
TraesCS4B01G355700.1	Wheat	nucleus	97.18	93.88
OQU81648	Sorghum	nucleus	93.43	93.43
Zm00001d003566_P001	Maize	plasma membrane	93.9	92.59
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	93.66	92.36
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	91.78	92.0
HORVU4Hr1G086010.2	Barley	plastid	97.18	90.59
GSMUA_Achr9P29490_001	Banana	cytosol	82.16	88.61
KRH61975	Soybean	cytosol, nucleus, plastid	85.68	86.49
KRH52636	Soybean	endoplasmic reticulum	85.21	86.02
CDY43320	Canola	extracellular	83.1	84.49
CDX90170	Canola	cytosol, nucleus, plastid	82.63	84.01
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	82.39	83.77
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	82.39	83.77
GSMUA_Achr10P...	Banana	cytosol	82.86	83.65
CDX99790	Canola	cytosol, nucleus, plastid	81.92	83.29
KRH04812	Soybean	nucleus	82.16	83.14
CDY50790	Canola	cytosol	81.46	82.82
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	81.46	82.82
KRH16194	Soybean	cytosol	78.17	81.42
Solyc05g013030.1.1	Tomato	plastid	79.58	80.14
PGSC0003DMT400072856	Potato	plastid	79.34	79.91
Os03t0576400-00	Rice	nucleus	19.95	77.27
CDY15648	Canola	cytosol, mitochondrion	49.77	72.85
VIT_12s0034g00940.t01	Wine grape	extracellular	19.48	72.17
CDX94649	Canola	endoplasmic reticulum	60.33	65.23
VIT_15s0048g00130.t01	Wine grape	cytosol	5.16	57.89
TraesCS3A01G191800.1	Wheat	golgi, unclear	19.95	19.36

Protein Annotations

EnsemblPlants:TraesCS5A01G524900.1	EnsemblPlantsGene:TraesCS5A01G524900	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000717	InterPro:IPR011990	InterPro:PCI_dom	InterPro:TPR-like_helical_dom_sf	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	PFAM:PF01399	PFscan:PS50250	SEG:seg	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	MapMan:19.2.6.2.2.5	:	:

Description

No Description!

Coordinates

chr5A:-:685537404..685538684

Molecular Weight (calculated)

47839.9 Da

IEP (calculated)

5.985

GRAVY (calculated)

-0.102

Length

426 amino acids

Sequence
(BLAST)

001: MSSAMESSYL PATTESIEKA QEAKDASESI SILYRVIQDP SSSADALRIK ELAITNLTNY LTKENRAEDL RNLLTQLRPF FSLIPKAKTA KIVRGIIDAV
101: AKIPGTSDLQ ISLCKEMVEW TRAEKRTFLR QRVEARLAAL LLENQEYTEA LTLLTGLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPAQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFNALDDPRA IFSLKYMLLC KIMVNHADDV AGIISSKASL KYVGPDVDAM KAVADAYSKR
301: SLKYFETALR DYKAQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI EHVAQMIELP VDHVEKKLSQ MILDKKFAGT LDQGAGCLII FEEMKTEAIF
401: PATLETISNV GKVVDSLYMR SAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.