Factsheet for Zm00001d041456_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17355	Sorghum	plastid	98.83	98.83
Zm00001d003566_P001	Maize	plasma membrane	95.31	93.98
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	95.07	93.75
TraesCS2B01G285600.1	Wheat	golgi	92.25	92.47
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	92.25	92.47
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	92.25	92.47
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	92.02	92.24
GSMUA_Achr9P29490_001	Banana	cytosol	80.99	87.34
KRH61975	Soybean	cytosol, nucleus, plastid	85.68	86.49
KRH52636	Soybean	endoplasmic reticulum	85.21	86.02
GSMUA_Achr10P...	Banana	cytosol	83.33	84.12
CDY43320	Canola	extracellular	81.92	83.29
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	81.69	83.05
CDX90170	Canola	cytosol, nucleus, plastid	81.69	83.05
KRH04812	Soybean	nucleus	81.92	82.9
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	81.46	82.82
CDX99790	Canola	cytosol, nucleus, plastid	81.22	82.58
CDY50790	Canola	cytosol	80.52	81.86
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	80.52	81.86
KRH16194	Soybean	cytosol	77.93	81.17
Solyc05g013030.1.1	Tomato	plastid	80.05	80.61
PGSC0003DMT400072856	Potato	plastid	79.81	80.38
CDY15648	Canola	cytosol, mitochondrion	50.0	73.2
VIT_12s0034g00940.t01	Wine grape	extracellular	18.78	69.57
CDX94649	Canola	endoplasmic reticulum	60.8	65.74
VIT_15s0048g00130.t01	Wine grape	cytosol	4.69	52.63
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	20.42	19.33
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	20.42	18.75

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100193485	MapMan:19.2.6.2.2.5	UniProt:B4FF65	EMBL:BT035753	ncoils:Coil
GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	InterPro:IPR000717	InterPro:IPR011990	ProteinID:ONM33075.1	InterPro:PCI_dom	PFAM:PF01399
PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B6548	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d041456	EnsemblPlants:Zm00001d041456_P001
EnsemblPlants:Zm00001d041456_T001	SEG:seg	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 11 homolog

Coordinates

chr3:-:121302653..121303933

Molecular Weight (calculated)

47706.8 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.110

Length

426 amino acids

Sequence
(BLAST)

001: MSSSMQSSYL PATTESVAKA QEAKDASESI SILYRVLEDP SSSADALRVK ELAITNLTNY LTKENRAEDL RNLLTQLRPF FALIPKAKTA KIVRGIIDAV
101: AKVPGTSQLQ ISLCKEMVEW TRAEKRTFLR QRVEARLAAL LLENQEYTEA LTLLSGLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPSQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFSSLEDPKA IFSLKYMLLC KIMVNQADDV AGIISSKAGL KYLGPDVDAM KAVADAYSKR
301: SLKYFETALR DYKAQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI AHIAEMIELP MNHVEKKLSQ MILDKKFAGT LDQGAGCLII FEDSKTEEIF
401: PATLETITNV GKVVDSLYMR SAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.