CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041456_P001	Maize	extracellular	98.83	98.83
OQU81648	Sorghum	nucleus	94.6	94.6
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	92.72	92.94
TraesCS2B01G285600.1	Wheat	golgi	92.72	92.94
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	92.72	92.94
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	92.49	92.71
GSMUA_Achr9P29490_001	Banana	cytosol	81.22	87.59
KRH61975	Soybean	cytosol, nucleus, plastid	85.92	86.73
KRH52636	Soybean	endoplasmic reticulum	85.45	86.26
GSMUA_Achr10P...	Banana	cytosol	83.57	84.36
CDY43320	Canola	extracellular	82.39	83.77
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	82.16	83.53
CDX90170	Canola	cytosol, nucleus, plastid	81.92	83.29
KRH04812	Soybean	nucleus	82.16	83.14
CDX99790	Canola	cytosol, nucleus, plastid	81.69	83.05
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	81.69	83.05
CDY50790	Canola	cytosol	80.99	82.34
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	80.99	82.34
KRH16194	Soybean	cytosol	78.17	81.42
Solyc05g013030.1.1	Tomato	plastid	80.28	80.85
PGSC0003DMT400072856	Potato	plastid	80.05	80.61
CDY15648	Canola	cytosol, mitochondrion	50.23	73.54
VIT_12s0034g00940.t01	Wine grape	extracellular	18.78	69.57
CDX94649	Canola	endoplasmic reticulum	61.27	66.24
VIT_15s0048g00130.t01	Wine grape	cytosol	4.69	52.63
EES02774	Sorghum	cytosol	20.42	19.82

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	EntrezGene:8070126	UniProt:C5YRI0	ncoils:Coil	EnsemblPlants:EES17355
ProteinID:EES17355	ProteinID:EES17355.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248
InterPro:IPR000717	InterPro:IPR011990	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3008G161800	SUPFAM:SSF46785	SUPFAM:SSF48452
unigene:Sbi.3951	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8831B	InterPro:WH_DNA-bd_sf	RefSeq:XP_002443517.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:59571332..59574154

Molecular Weight (calculated)

47690.8 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.096

Length

426 amino acids

Sequence
(BLAST)

001: MSSSMQSSYL PATTESIAKA QEAKDASESI SILYRVLEDP SSSADALRVK ELAITNLTSY LTKENRAEDL RNLLTQLRPF FALIPKAKTA KIVRGIIDAV
101: AKIPGTSELQ ISLCKEMVEW TRAEKRTFLR QRVEARLAAL LLENQEYTEA LTLLSGLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPSQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFSSLEDPKA IFSLKYMLLC KIMVNQADDV AGIISSKAGL KYLGPDVDAM KAVADAYSKR
301: SLKYFETALR DYKAQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI AHIAEMIELP INHVEKKLSQ MILDKKFAGT LDQGAGCLII FEDSKTEEIF
401: PATLETITNV GKVVDSLYMR SAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.