Factsheet for TraesCS2B01G329100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	98.59	99.53
Os04t0444600-01	Rice	plasma membrane	93.9	94.12
OQU81648	Sorghum	nucleus	92.49	92.49
TraesCS2B01G285600.1	Wheat	golgi	91.78	92.0
Zm00001d003566_P001	Maize	plasma membrane	93.19	91.9
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	92.96	91.67
TraesCS4B01G355700.1	Wheat	nucleus	94.84	91.61
GSMUA_Achr9P29490_001	Banana	cytosol	81.69	88.1
KRH61975	Soybean	cytosol, nucleus, plastid	85.21	86.02
KRH52636	Soybean	endoplasmic reticulum	84.74	85.55
HORVU2Hr1G077540.2	Barley	cytosol	97.89	85.1
CDY43320	Canola	extracellular	83.33	84.73
CDX90170	Canola	cytosol, nucleus, plastid	82.86	84.25
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	82.63	84.01
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	82.39	83.77
CDX99790	Canola	cytosol, nucleus, plastid	82.16	83.53
CDY50790	Canola	cytosol	81.69	83.05
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	81.69	83.05
GSMUA_Achr10P...	Banana	cytosol	82.16	82.94
KRH04812	Soybean	nucleus	81.69	82.66
KRH16194	Soybean	cytosol	78.4	81.66
Solyc05g013030.1.1	Tomato	plastid	79.34	79.91
PGSC0003DMT400072856	Potato	plastid	79.11	79.67
Os03t0576400-00	Rice	nucleus	19.95	77.27
CDY15648	Canola	cytosol, mitochondrion	49.77	72.85
VIT_12s0034g00940.t01	Wine grape	extracellular	19.48	72.17
CDX94649	Canola	endoplasmic reticulum	60.09	64.97
VIT_15s0048g00130.t01	Wine grape	cytosol	4.69	52.63
TraesCS3B01G219800.1	Wheat	cytosol	19.95	19.36

Protein Annotations

EnsemblPlants:TraesCS2B01G329100.1	EnsemblPlantsGene:TraesCS2B01G329100	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000717	InterPro:IPR011990	InterPro:PCI_dom	InterPro:TPR-like_helical_dom_sf	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	PFAM:PF01399	PFscan:PS50250	SEG:seg	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	MapMan:19.2.6.2.2.5	:	:

Description

No Description!

Coordinates

chr2B:+:472898494..472899774

Molecular Weight (calculated)

47629.6 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.083

Length

426 amino acids

Sequence
(BLAST)

001: MSSSMESSYL PATTESIAMA QEAKNASESI SILYRVIQDP SSSADALRTK ELAITNLTNY LTEESRAEEL RNLLTQLRPF FSLIPKAKTA KIVRGIIDAV
101: SKIPGTSDLQ ISLCKEMVEW TRAEKRTFLR QRVEARLAAL LLENKEYTEA LTLLTGLIKE VRRLDDKLLL VDIDLLESKL HFSLRNLPKA KASLTAARTA
201: ANAIYVPPAQ QGTIDLQSGI LHAEEKDYKT AYSYFFEAFE AFNALDDPRA IFSLKYMLLC KIMVNQADDV AGIISSKASL KYVGPDVDAM KAVADAYSKR
301: SLKYFETALR DFKAQLEEDP IVHRHLSSLY DTLLEQNLCR LIEPYSRVEI GHVAQMIELA VDDVEKKLSQ MILDKKFAGT LDQGAGCLII FEDQKTEAIF
401: PATLETISNV GKVVDSLYMR SAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.