Factsheet for Os01t0279200-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0746000-01
Os03t0116500-01
Os03t0197400-01
Os08t0119000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Os02t0746000-01	AT1G26830.1	12615944
AT2G26990.1	Os03t0116500-01	AT3G61140.1	11854419
AT2G26990.1	Os03t0116500-01	AT3G61140.1	12615944
AT2G26990.1	Os08t0119000-01	AT5G14250.1	12615944
AT2G26990.1	Os03t0197400-01	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G039980.8	Barley	nucleus	97.72	97.72
TraesCS3A01G191800.1	Wheat	golgi, unclear	97.72	97.72
TraesCS3D01G194400.1	Wheat	nucleus	97.72	97.72
TraesCS3B01G219800.1	Wheat	cytosol	97.49	97.49
EES02774	Sorghum	cytosol	96.81	96.81
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	95.9	93.56
VIT_08s0040g00430.t01	Wine grape	cytosol	92.26	92.05
KRH64921	Soybean	nucleus	91.34	91.34
Solyc11g062430.1.1	Tomato	cytosol	91.12	91.12
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	96.13	90.95
Solyc01g008840.2.1	Tomato	cytosol	90.66	90.66
PGSC0003DMT400082384	Potato	cytosol	90.43	90.43
KRG94272	Soybean	nucleus	89.07	89.07
KRH57710	Soybean	nucleus	89.07	89.07
Solyc10g081150.1.1	Tomato	nucleus	88.61	88.61
PGSC0003DMT400072227	Potato	nucleus	88.61	88.61
KRG94968	Soybean	cytosol	90.43	88.22
CDY38538	Canola	cytosol	83.83	83.83
Bra000529.1-P	Field mustard	cytosol	83.14	83.14
CDX71478	Canola	cytosol	83.14	83.14
CDX83249	Canola	cytosol	82.92	83.11
AT2G26990.1	Thale cress	cytosol	82.92	82.92
PGSC0003DMT400058484	Potato	cytosol	90.2	82.85
CDY04472	Canola	cytosol	82.69	82.69
GSMUA_Achr6P08520_001	Banana	cytosol	35.54	81.68
Bra012038.1-P	Field mustard	nucleus	82.0	42.15
Os04t0444600-01	Rice	plasma membrane	19.82	20.47
Os03t0576400-00	Rice	nucleus	2.05	8.18

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	EntrezGene:4326902	ProteinID:BAF04660.1	ProteinID:BAS71579.1	ProteinID:EEE54333.1
GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0045892
InterPro:IPR000717	EnsemblPlantsGene:Os01g0279200	EnsemblPlants:Os01t0279200-02	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	UniProt:Q0JNL8	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0000DD8A92	InterPro:WH_DNA-bd_sf	RefSeq:XP_015622387.1	:	:	:

Description

Similar to COP9 signalosome complex subunit 2. (Os01t0279200-01);Similar to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12). (Os01t0279200-02);Similar to COP9 signalosome complex subunit 2. (Os01t0279200-03)

Coordinates

chr1:+:9878413..9885462

Molecular Weight (calculated)

51417.8 Da

IEP (calculated)

5.927

GRAVY (calculated)

-0.659

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDDEPE EQDVDIENQY YNSKGMVETD PEGALAGFDQ VVRMEPEKAE WGFKALKQTV KLYYKLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN FSLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCQREDG SDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYTKALSI KSAIPHPRIM GIIRECGGKM HMAERQWADA ATDFFEAFKN YDEAGNPRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQKNDIM EFEKILKSNR RTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SQELNFPEKD VEQLLVSLIL DNRIQGHIDQ
401: VNKLLERGDR SKGMRKYQAI DKWNTQLKNI YQTVSNRVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.