Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13281 | Sorghum | cytosol | 81.46 | 80.89 |
| Zm00001d049652_P001 | Maize | cytosol | 80.28 | 80.47 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 80.28 | 80.09 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 80.05 | 79.86 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 76.53 | 76.71 |
| Zm00001d035130_P001 | Maize | cytosol | 81.69 | 74.68 |
| GSMUA_Achr11P... | Banana | cytosol | 71.36 | 72.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 67.37 | 70.0 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 79.34 | 69.4 |
| KRH57651 | Soybean | cytosol | 66.43 | 66.9 |
| KRG94317 | Soybean | cytosol | 66.2 | 66.67 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 65.26 | 65.57 |
| Solyc02g093920.2.1 | Tomato | cytosol | 65.02 | 64.72 |
| PGSC0003DMT400052100 | Potato | cytosol | 65.02 | 64.72 |
| Zm00001d028517_P001 | Maize | cytosol | 16.67 | 64.55 |
| Bra023453.1-P | Field mustard | cytosol | 56.1 | 56.24 |
| Bra006246.1-P | Field mustard | cytosol | 55.4 | 56.06 |
| CDX85608 | Canola | cytosol | 55.87 | 56.0 |
| CDX91076 | Canola | cytosol | 55.87 | 55.87 |
| CDX78568 | Canola | cytosol | 54.93 | 55.58 |
| AT5G14250.1 | Thale cress | cytosol | 55.16 | 54.78 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 28.64 | 48.61 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 28.17 | 48.0 |
| CDX70553 | Canola | mitochondrion | 37.79 | 44.11 |
| CDY26433 | Canola | mitochondrion | 30.05 | 29.09 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | EntrezGene:4344535 | EMBL:AK058565 | EMBL:AK099289 | ProteinID:BAD09047.1 |
| ProteinID:BAF22784.1 | ProteinID:BAT03576.1 | InterPro:CSN3 | ProteinID:EEE67948.1 | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0010971 | GO:GO:0019538 | InterPro:IPR000717 | EnsemblPlantsGene:Os08g0119000 | EnsemblPlants:Os08t0119000-01 |
| InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | UniProt:Q6ZJ47 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000023ACDB | InterPro:WH_DNA-bd_sf | RefSeq:XP_015648223.1 |
Description
CSN3 (Fragment). (Os08t0119000-01);CSN3 (Fragment). (Os08t0119000-02)
Coordinates
chr8:+:1050637..1054921
Molecular Weight (calculated)
47709.3 Da
IEP (calculated)
6.020
GRAVY (calculated)
-0.138
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: METVETLVAH IQGLSGSGEE LAHLHNLLRQ ADGEPLRAHS AALLPFLAQL HPSAHSLGFL YLLEAFASSA SNLRAQGGGD FLVTTADFLV SCSAEQIRLA
101: PDKFLSVCRV FKNEVMQLNA PIRGIAPLRA AIRKIQTSSE ELTPIHADYL LLCLLAKQYK AGLSVLEDDI LEVDQPKDLF LYCYYGGMIY IGLKKFTIAL
201: DFLHNAVTVP MSSLNAIAVE AYKKYILVSL IQNGQVPSFP KYTSSTAQRN LKNHAQVYVD LSTCYSKGNY SELEEYIQLN AEKFQSDNNL GLVKQVLSSM
301: YKRNIQRLTQ TYLTLSLEDI ASSVQLKTPK EAEMHVLRMI EDGEIHATIN QKDGMVSFHE DPEQYKSCEM VEHIDSSIQR LMALSKKLSS IDENISCDPA
401: YLMKTGRERG GRFDYDDFDS VPHKYF
101: PDKFLSVCRV FKNEVMQLNA PIRGIAPLRA AIRKIQTSSE ELTPIHADYL LLCLLAKQYK AGLSVLEDDI LEVDQPKDLF LYCYYGGMIY IGLKKFTIAL
201: DFLHNAVTVP MSSLNAIAVE AYKKYILVSL IQNGQVPSFP KYTSSTAQRN LKNHAQVYVD LSTCYSKGNY SELEEYIQLN AEKFQSDNNL GLVKQVLSSM
301: YKRNIQRLTQ TYLTLSLEDI ASSVQLKTPK EAEMHVLRMI EDGEIHATIN QKDGMVSFHE DPEQYKSCEM VEHIDSSIQR LMALSKKLSS IDENISCDPA
401: YLMKTGRERG GRFDYDDFDS VPHKYF
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.