Factsheet for Os07t0577400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 27208292

gfp PMID: 27208292 doi

G Zang, H Zou, Y Zhang, Z Xiang, J Huang, L Luo, C Wang, K Lei, X Li, D Song, AU Din, G Wang

Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College of Chongqing University, Chongqing 400030, China (G.Z., H.Z., Z.X., J.H., L.L., A.U.D., G.W.);Institute of Life Science, Chongqing Medical University, Chongqing 400016, China (Y.Z.);Chongqing Key Laboratory of Adversity Agriculture, Biotechnology Research Center, Chongqing Academy of Agricultural Sciences, Chongqing 401329, China (C.W., K.L., X.L.); andShuzhou Rice Research Institute, Chongzhou 611200, China (D.S.) wanggx@cqu.edu.cn., Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College of Chongqing University, Chongqing 400030, China (G.Z., H.Z., Z.X., J.H., L.L., A.U.D., G.W.);Institute of Life Science, Chongqing Medical University, Chongqing 400016, China (Y.Z.);Chongqing Key Laboratory of Adversity Agriculture, Biotechnology Research Center, Chongqing Academy of Agricultural Sciences, Chongqing 401329, China (C.W., K.L., X.L.); andShuzhou Rice Research Institute, Chongzhou 611200, China (D.S.).

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0104600-01
Os02t0771100-01
Os03t0197400-01
Os04t0428900-01
Os08t0119000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	Os02t0771100-01	AT2G32950.1	11877375
AT3G13550.1	Os02t0771100-01	AT2G32950.1	18552200
AT3G13550.1	Os01t0104600-01	AT4G10180.1	16844902
AT3G13550.1	Os01t0104600-01	AT4G10180.1	18552200
AT3G13550.1	Os04t0428900-01	AT4G14110.1	11877375
AT3G13550.1	Os08t0119000-01	AT5G14250.1	11877375
AT3G13550.1	Os03t0197400-01	AT5G42970.1	11877375

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G187000.1	Wheat	plastid	80.2	85.26
Zm00001d021904_P001	Maize	plastid	76.73	84.24
TraesCS2B01G220200.1	Wheat	plastid	79.7	83.85
EER97436	Sorghum	plastid	76.24	82.35
GSMUA_Achr4P22180_001	Banana	cytosol	51.98	75.54
VIT_06s0004g00730.t01	Wine grape	plastid	63.37	72.73
Solyc01g005840.2.1	Tomato	plastid	59.41	66.3
KRH42820	Soybean	plastid	57.43	65.91
AT3G13550.1	Thale cress	mitochondrion	55.45	61.54
Bra027422.1-P	Field mustard	plastid	53.96	59.56
CDY59253	Canola	mitochondrion	53.96	59.56
CDY23617	Canola	plastid	53.96	59.56
Os09t0293400-01	Rice	cytosol	40.1	54.73
Os01t0658400-01	Rice	cytosol	39.11	53.74
Os04t0667800-01	Rice	cytosol	38.12	52.03
Os02t0120600-01	Rice	cytosol	37.62	51.35
Os02t0261100-01	Rice	cytosol	37.62	51.35
Os01t0819400-00	Rice	cytosol	39.11	50.0
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	29.21	38.56
Os03t0791800-01	Rice	mitochondrion, nucleus	21.29	28.29
Os05t0182500-02	Rice	mitochondrion, nucleus	21.29	28.29
Os07t0166800-02	Rice	mitochondrion, nucleus	21.29	28.29

Protein Annotations

MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	EMBL:AK111080	ProteinID:BAF22002.1	ProteinID:BAT02301.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009791	GO:GO:0010099	GO:GO:0016020	GO:GO:0016787	GO:GO:0030246
GO:GO:0030247	GO:GO:0046658	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlantsGene:Os07g0577400	EnsemblPlants:Os07t0577400-01
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41	UniProt:Q0D571	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000E12BB6	SEG:seg	:

Description

Similar to Constitutive photomorphogenesis protein 10. (Os07t0577400-01)

Coordinates

chr7:+:23349441..23352488

Molecular Weight (calculated)

21120.0 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.202

Length

202 amino acids

Sequence
(BLAST)

001: MSSSSSSFPT SRSPFPAGAG AGTSGGGGGG GGGSGGGGGG GRWSGVRPWG SSGGTSVSSS GKRIQKELMD LNASDCSAGP KGDNLYHWLS TIIGPQGSPY
101: EGGIFFLDIV FPIDYPFKPP MVTFKTRIYH CNVDSTGNLS MDILREGWSP ALTISKVLLA IKAIITNPDP YCPLVPSIGH LYLTDRTKHD EIAAEWTMRF
201: AR

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.