Factsheet for Solyc01g005840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g056340.2.1
Solyc01g104600.2.1
Solyc02g021470.2.1
Solyc02g021650.2.1
Solyc02g070460.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	Solyc12g005950.1.1	AT2G32950.1	11877375
AT3G13550.1	Solyc12g005950.1.1	AT2G32950.1	18552200
AT3G13550.1	Solyc02g021650.2.1	AT4G05420.1	16844902
AT3G13550.1	Solyc02g021650.2.1	AT4G05420.1	18552200
AT3G13550.1	Solyc01g056340.2.1	AT4G10180.1	16844902
AT3G13550.1	Solyc01g056340.2.1	AT4G10180.1	18552200
AT3G13550.1	Solyc01g104600.2.1	AT4G14110.1	11877375
AT3G13550.1	Solyc02g093920.2.1	AT5G14250.1	11877375
AT3G13550.1	Solyc04g080160.2.1	AT5G42970.1	11877375
AT3G13550.1	Solyc02g021470.2.1	AT5G46210.1	16844902
AT3G13550.1	Solyc02g070460.2.1	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00730.t01	Wine grape	plastid	71.82	73.86
GSMUA_Achr4P22180_001	Banana	cytosol	53.59	69.78
KRH42820	Soybean	plastid	66.3	68.18
CDY59253	Canola	mitochondrion	63.54	62.84
AT3G13550.1	Thale cress	mitochondrion	62.98	62.64
TraesCS2A01G187000.1	Wheat	plastid	65.75	62.63
Bra027422.1-P	Field mustard	plastid	62.98	62.3
CDY23617	Canola	plastid	61.33	60.66
TraesCS2B01G220200.1	Wheat	plastid	64.09	60.42
Os07t0577400-01	Rice	nucleus	66.3	59.41
Zm00001d021904_P001	Maize	plastid	59.12	58.15
EER97436	Sorghum	plastid	59.67	57.75
Solyc08g081950.2.1	Tomato	cytosol	34.25	52.1
Solyc01g095490.2.1	Tomato	cytosol	41.44	50.68
Solyc10g011740.2.1	Tomato	cytosol	41.44	50.68
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	40.88	50.0
Solyc05g050230.2.1	Tomato	cytosol	40.88	50.0
Solyc08g008220.2.1	Tomato	cytosol	40.88	50.0
Solyc07g066080.2.1	Tomato	cytosol	40.33	49.32
Solyc02g083570.2.1	Tomato	cytosol	40.33	49.32
Solyc12g056100.1.1	Tomato	cytosol	40.33	49.32
Solyc06g082600.2.1	Tomato	extracellular	40.33	49.32
Solyc06g007510.2.1	Tomato	cytosol	40.33	49.32
Solyc03g007470.2.1	Tomato	cytosol	40.33	49.32
Solyc07g062570.2.1	Tomato	plastid	31.49	37.25
Solyc10g007260.2.1	Tomato	plastid	31.49	37.25
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	25.97	30.92
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	25.97	30.92
Solyc02g067420.2.1	Tomato	nucleus	25.97	30.92
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	25.97	30.92

Protein Annotations

MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010099	InterPro:IPR000608
InterPro:IPR016135	UniProt:K4ASF0	PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41
SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc01g005840.2	EnsemblPlants:Solyc01g005840.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002761CE5	SEG:seg	:	:	:	:

Description

Constitutive photomorphogenesis protein 10 [Source:Projected from Arabidopsis thaliana (AT3G13550) UniProtKB/Swiss-Prot;Acc:Q9LJD7]

Coordinates

chr1:+:571846..574849

Molecular Weight (calculated)

19394.1 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.190

Length

181 amino acids

Sequence
(BLAST)

001: MYSGAPSGGI AIGGGGGGVG RGGGRTWSST TSVSTSGKRI QKEMTELSME APPDCAAGPK GDNLYHWVAT LFGPPGTPYE GGIFFLDITF PSDYPFKPPK
101: VVFKTRIYHC NVDPSGNVSL DILTENWSPA LTISKVLLAL RSMFTNPETY KPVVPGIAHL YLGDKAKHDE VAAQWTLRFA R

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.