Factsheet for Solyc01g056340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	Solyc02g021650.2.1	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080769	Potato	cytosol	51.05	89.9
VIT_15s0048g02140.t01	Wine grape	mitochondrion	82.6	81.36
KRH77746	Soybean	mitochondrion	78.97	77.05
KRH27796	Soybean	mitochondrion	78.59	76.68
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	34.42	74.69
KRH15950	Soybean	cytosol	56.6	73.82
CDY05087	Canola	plastid	74.0	72.2
CDX90747	Canola	mitochondrion, nucleus, plastid	73.61	71.69
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	73.42	71.51
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	74.0	71.27
EES13430	Sorghum	mitochondrion	68.83	70.45
Os01t0104600-01	Rice	mitochondrion	68.64	70.25
TraesCS3B01G231100.1	Wheat	mitochondrion	67.5	69.08
TraesCS3A01G194600.1	Wheat	mitochondrion	67.11	68.69
HORVU3Hr1G044640.3	Barley	mitochondrion	62.91	68.26
TraesCS4D01G180900.3	Wheat	mitochondrion	66.35	67.91
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	37.28	67.01
Zm00001d020989_P011	Maize	plastid	67.69	65.8
KRH18185	Soybean	nucleus	8.8	62.16
TraesCS4A01G125100.1	Wheat	plastid	65.58	60.71
Zm00001d009288_P014	Maize	mitochondrion	58.89	60.04
Zm00001d040485_P001	Maize	mitochondrion	14.15	49.66
Zm00001d024743_P001	Maize	cytosol	10.71	48.28

Protein Annotations

MapMan:19.2.2.8.3.3.2	InterPro:6-hairpin_glycosidase_sf	EMBL:AJ222798	ProteinID:CAA11914.1	InterPro:De-etiolated_protein_1_Det1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0010017	PFAM:PF09737	PANTHER:PTHR13374	UniProt:Q9ZNU6	SUPFAM:SSF48208
EnsemblPlantsGene:Solyc01g056340.2	EnsemblPlants:Solyc01g056340.2.1	UniParc:UPI0000030D38	SEG:seg	:	:

Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNU6]

Coordinates

chr1:+:53595244..53615774

Molecular Weight (calculated)

60421.1 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.214

Length

523 amino acids

Sequence
(BLAST)

001: MFKTNNVTAR LFERQICTPA PGTSIHRARR FYENVVPSYT IYDVECPDHS FRKFTDDGLY FVSFSRNHQD LVVYRPTWLT FSCKEEDCDT HDLPLKARKF
101: ESFFTQLYSV TLASSGELIC KDFFLYMESN QFGLFATSTA QIHDAPPTGG AIQGVPSVEK ITFHLLRLVD GAILDERVFH NDYVNLAHSI GAFLYDDLLA
201: IVSLRYQRIH ILQIRDSGDL VDVRAIGEFC REDDELFLNS NSQVLVNHVG NGFHHSLPQS ETSFLSGIKQ RLLSYIFRGI WNEADQTMRV QCLKKKFYFH
301: FQDYIDLIIW KVQFLDRHHL LIKFGSVDGG VSRNADIHPS FFAVYNMETT EIVAFYQNSA DELYFLFELF SDHFHVSSKS SLHMNFMSSH SNNIHALEQL
401: RCTKNKATNF SQFVKKMMAS LPCSCQSQSP SPYFDQSLFR FDEKLISAID RHRQSTDHPI KFISRRQPNI LKFKMKPGPE AGSTDGRTKK ICSFLFHPIL
501: PLALSVQQTL FLQASVVNIH FRR

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.