Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P07200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10180.1 | GSMUA_Achr8P07200_001 | AT4G05420.1 | 16792691 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080769 | Potato | cytosol | 60.48 | 59.26 |
| KRH15950 | Soybean | cytosol | 60.48 | 43.89 |
| VIT_15s0048g02140.t01 | Wine grape | mitochondrion | 70.45 | 38.61 |
| Solyc01g056340.2.1 | Tomato | mitochondrion | 67.01 | 37.28 |
| KRH77746 | Soybean | mitochondrion | 67.35 | 36.57 |
| KRH27796 | Soybean | mitochondrion | 66.32 | 36.01 |
| AT4G10180.1 | Thale cress | mitochondrion, nucleus, peroxisome | 62.89 | 33.7 |
| Bra000702.1-P | Field mustard | mitochondrion, nucleus, plastid | 61.17 | 33.15 |
| CDX90747 | Canola | mitochondrion, nucleus, plastid | 61.17 | 33.15 |
| CDY05087 | Canola | plastid | 60.82 | 33.02 |
| KRH18185 | Soybean | nucleus | 1.72 | 6.76 |
| GSMUA_Achr7P07400_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 3.09 | 3.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P07410_001 | EnsemblPlants:GSMUA_Achr7T07410_001 | EnsemblPlantsGene:GSMUA_Achr7G07410_001 | InterPro:De-etiolated_protein_1_Det1 | PANTHER:PTHR13374 | PFAM:PF09737 |
| UniParc:UPI000296AC59 | UniProt:M0TFI1 | MapMan:19.2.2.8.3.3.2 | : | : | : |
Description
Light-mediated development protein DET1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07410_001]
Coordinates
chr7:-:5530308..5538753
Molecular Weight (calculated)
33528.2 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.070
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRGTNVAAR VFERQILTPR PGASINLVRH FYENLVPSCT ICDIDCPDHS LRKITDDGRY LVSFSRNLQD IIVYRPTWLS FSFKGENCDY QRLTQKAKKF
101: DSFFTQLYTV SLGSSSEFIC KDFFLYLEDP QFGLFATSTA QSHEVPAIEG AIHGVPSIEK ITFHLVRLKD GVVMDEKSFC NDFVNLAHSM GVFLYEDLLC
201: IMSLRYQTIH ILQVRDSGNL VDVRNIGSFC LEDDELFLNS HAQPVAQASS FLTGIKQRLL SFIFRKAWSE EADPILQFYM GNWRLKFEPR F
101: DSFFTQLYTV SLGSSSEFIC KDFFLYLEDP QFGLFATSTA QSHEVPAIEG AIHGVPSIEK ITFHLVRLKD GVVMDEKSFC NDFVNLAHSM GVFLYEDLLC
201: IMSLRYQTIH ILQVRDSGNL VDVRNIGSFC LEDDELFLNS HAQPVAQASS FLTGIKQRLL SFIFRKAWSE EADPILQFYM GNWRLKFEPR F
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
Arabidopsis Description
DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]
SUBAcon: [nucleus,peroxisome,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.