Subcellular Localization
min:
: max
Winner_takes_all: nucleus, peroxisome, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000702.1-P | Field mustard | mitochondrion, nucleus, plastid | 86.56 | 87.52 |
| CDY05087 | Canola | plastid | 86.37 | 87.5 |
| CDX90747 | Canola | mitochondrion, nucleus, plastid | 86.37 | 87.34 |
| Solyc01g056340.2.1 | Tomato | mitochondrion | 71.27 | 74.0 |
| GSMUA_Achr7P07400_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 31.86 | 71.78 |
| VIT_15s0048g02140.t01 | Wine grape | mitochondrion | 69.98 | 71.56 |
| KRH77746 | Soybean | mitochondrion | 70.17 | 71.08 |
| KRH27796 | Soybean | mitochondrion | 69.98 | 70.9 |
| KRH15950 | Soybean | cytosol | 49.91 | 67.58 |
| Os01t0104600-01 | Rice | mitochondrion | 62.06 | 65.95 |
| EES13430 | Sorghum | mitochondrion | 61.88 | 65.75 |
| TraesCS3B01G231100.1 | Wheat | mitochondrion | 61.69 | 65.56 |
| TraesCS3A01G194600.1 | Wheat | mitochondrion | 61.33 | 65.17 |
| PGSC0003DMT400080769 | Potato | cytosol | 35.17 | 64.31 |
| HORVU3Hr1G044640.3 | Barley | mitochondrion | 56.17 | 63.28 |
| TraesCS4D01G180900.3 | Wheat | mitochondrion | 59.48 | 63.21 |
| GSMUA_Achr7P07410_001 | Banana | cytosol, mitochondrion | 33.7 | 62.89 |
| Zm00001d020989_P011 | Maize | plastid | 60.59 | 61.15 |
| TraesCS4A01G125100.1 | Wheat | plastid | 59.3 | 56.99 |
| Zm00001d009288_P014 | Maize | mitochondrion | 53.04 | 56.14 |
| Zm00001d024743_P001 | Maize | cytosol | 11.42 | 53.45 |
| KRH18185 | Soybean | nucleus | 7.18 | 52.7 |
| Zm00001d040485_P001 | Maize | mitochondrion | 13.81 | 50.34 |
Protein Annotations
| MapMan:19.2.2.8.3.3.2 | InterPro:6-hairpin_glycosidase_sf | EntrezGene:826609 | ProteinID:AAB59299.1 | ProteinID:AAC62814.1 | ProteinID:AEE82852.1 |
| ArrayExpress:AT4G10180 | EnsemblPlantsGene:AT4G10180 | RefSeq:AT4G10180 | TAIR:AT4G10180 | RefSeq:AT4G10180-TAIR-G | EnsemblPlants:AT4G10180.1 |
| TAIR:AT4G10180.1 | Unigene:At.33647 | EMBL:BT015348 | EMBL:BT020454 | ProteinID:CAB39770.1 | ProteinID:CAB78141.1 |
| Symbol:DET1 | InterPro:De-etiolated_protein_1_Det1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 | RefSeq:NP_192756.2 | UniProt:P48732 | PFAM:PF09737 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR13374 | SUPFAM:SSF48208 | UniParc:UPI000034F1D2 | SEG:seg | : | : |
Description
DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
Coordinates
chr4:+:6346411..6349314
Molecular Weight (calculated)
62494.9 Da
IEP (calculated)
7.956
GRAVY (calculated)
-0.342
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.