Factsheet for VIT_15s0048g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	VIT_10s0003g04360.t01	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77746	Soybean	mitochondrion	84.37	83.58
KRH27796	Soybean	mitochondrion	84.18	83.4
Solyc01g056340.2.1	Tomato	mitochondrion	81.36	82.6
KRH15950	Soybean	cytosol	61.02	80.8
PGSC0003DMT400080769	Potato	cytosol	42.94	76.77
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	34.65	76.35
KRH18185	Soybean	nucleus	10.17	72.97
CDX90747	Canola	mitochondrion, nucleus, plastid	72.69	71.88
CDY05087	Canola	plastid	72.5	71.83
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	72.5	71.69
EES13430	Sorghum	mitochondrion	67.98	70.65
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	38.61	70.45
Os01t0104600-01	Rice	mitochondrion	67.61	70.25
TraesCS3B01G231100.1	Wheat	mitochondrion	67.42	70.06
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	71.56	69.98
TraesCS3A01G194600.1	Wheat	mitochondrion	67.04	69.67
HORVU3Hr1G044640.3	Barley	mitochondrion	62.52	68.88
TraesCS4D01G180900.3	Wheat	mitochondrion	65.91	68.49
Zm00001d020989_P011	Maize	plastid	65.72	64.87
TraesCS4A01G125100.1	Wheat	plastid	65.16	61.24
Zm00001d009288_P014	Maize	mitochondrion	58.38	60.43
Zm00001d040485_P001	Maize	mitochondrion	14.31	51.01
Zm00001d024743_P001	Maize	cytosol	10.55	48.28

Protein Annotations

ArrayExpress:VIT_15s0048g02140	EMBL:FN596739	EnsemblPlants:VIT_15s0048g02140.t01	EnsemblPlantsGene:VIT_15s0048g02140	EntrezGene:100264330	InterPro:De-etiolated_protein_1_Det1
PANTHER:PTHR13374	PFAM:PF09737	ProteinID:CBI38752	ProteinID:CBI38752.3	RefSeq:XP_010661549.1	UniParc:UPI0001BE4F52
UniProt:D7U7H3	MapMan:19.2.2.8.3.3.2	:	:	:	:

Description

No Description!

Coordinates

chr15:-:16294037..16324919

Molecular Weight (calculated)

61555.3 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.282

Length

531 amino acids

Sequence
(BLAST)

001: MFRSNNVVAR IFQRQICTPA PGTSVHCARR FYENLVPSCT IYDVECPDHS FRKFTDDGQY LISFSRNNQD LIVYRPTWLS FSCKEEDCDS YDLPLKAKRF
101: ESFFTQLYCV SLASSNEFIC KDFFLYMESN QFGLFATSTA QIHDAPATGG AVQGIPSIEK ITFHLLRLED GFRLDERVFH NDFVNLTHSM GVFLYDDLLA
201: IVSLRYQTIH ILQIRDSGNL VDVRAIGTFC REDDELFLNS NAQRVAGPHQ LPRNHVENGL DHNQINMNNS FLSGIKQRLL SFIFRSISNE ETDKTLRMQC
301: LKKKFYFRFQ DYVDLIVWKA QFLDRHHLLI KFGSVDGGVS RNADQYPAFF AVYNMETTEI ISFYQNSADE LYLLFEHFCD HFHATSRNPL SMNFISSHSN
401: NIHALEQLRL IKNKSSSFSQ FVKKMMASLP FSCQSQSPSP YFDQSLFRFD EKLISATDRH RQSTDHPIKF ISRRRPYSLK FKIKPGPEAG STDGQTKKIC
501: SFLFHPILPL ALSIQQTLFL QSSVVNIHFR R

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.