Factsheet for TraesCS4D01G180900.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	TraesCS1B01G473400.1	AT4G05420.1	16792691
AT4G10180.1	TraesCS1D01G445700.1	AT4G05420.1	16792691
AT4G10180.1	TraesCS3A01G210100.2	AT4G05420.1	16792691
AT4G10180.1	TraesCS3B01G240600.1	AT4G05420.1	16792691
AT4G10180.1	TraesCSU01G002300.1	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G044640.3	Barley	mitochondrion	88.85	94.19
TraesCS4A01G125100.1	Wheat	plastid	98.83	89.38
Os01t0104600-01	Rice	mitochondrion	89.24	89.24
EES13430	Sorghum	mitochondrion	88.65	88.65
Zm00001d020989_P011	Maize	plastid	85.52	81.23
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	34.25	72.61
Solyc01g056340.2.1	Tomato	mitochondrion	67.91	66.35
VIT_15s0048g02140.t01	Wine grape	mitochondrion	68.49	65.91
KRH27796	Soybean	mitochondrion	68.1	64.93
KRH77746	Soybean	mitochondrion	68.1	64.93
PGSC0003DMT400080769	Potato	cytosol	36.99	63.64
KRH15950	Soybean	cytosol	49.71	63.34
Zm00001d040485_P001	Maize	mitochondrion	17.61	60.4
CDX90747	Canola	mitochondrion, nucleus, plastid	63.01	59.96
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	63.01	59.96
CDY05087	Canola	plastid	62.82	59.89
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	63.21	59.48
KRH18185	Soybean	nucleus	8.22	56.76
Zm00001d024743_P001	Maize	cytosol	12.52	55.17

Protein Annotations

EnsemblPlants:TraesCS4D01G180900.3	EnsemblPlantsGene:TraesCS4D01G180900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737	MapMan:19.2.2.8.3.3.2	:

Description

No Description!

Coordinates

chr4D:-:315075880..315088086

Molecular Weight (calculated)

59336.2 Da

IEP (calculated)

7.236

GRAVY (calculated)

-0.307

Length

511 amino acids

Sequence
(BLAST)

001: MVGFFRSGNL ASRVFDRQFL SPRPGATVNT VRQFYENLVP SYTIYDIDCP DYSFRKFTDD GKYLVAFSRN HQDLIVYRPI WLTFSCHEEC DSHDLPANAE
101: RFESFFKQLY SISLASSNEY ICEDFFLYME CHQYGLFATS TARSNESSVT EGAIHGVPSI EKITFYLVRL EDGAILDEKA FCNDFINLAH SIGAYLYEDL
201: VCIVSLRYQT IHVLQIRDSG SLVEVRRIGA FCREDDELFL YSHGQAAQGS SFLPGIKQRL LSFIFHKTWN EEPDQALRVQ HLKKKFYFHF QDYVDLIIWK
301: VQFLDRHHLF IKFGSVNGRV TRSTDQNLAF FAVYNMETTE IVSLYQQNSS EELYSLFEHY YDHFHANPQN SLHEKFISSN PNSVHALDQL RTIKSKASSP
401: SQFVKKMMAS LPYTCQSQSP SPYFDLSIFR YDEKLFSAID RHRHCTEHPI KFISVRQPNV VKFKIKPGSD SGASDSRGKR ISSLFHPFFP LALSIQQTNM
501: QPTVVNVHFR R

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.