CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	KRH25071	AT4G05420.1	16792691
AT4G10180.1	KRH43086	AT4G05420.1	16792691
AT4G10180.1	KRH59212	AT4G05420.1	16792691
AT4G10180.1	KRH59213	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	66.22	20.33
KRH15950	Soybean	cytosol	89.19	16.46
KRH27796	Soybean	mitochondrion	89.19	12.31
KRH77746	Soybean	mitochondrion	87.84	12.13
VIT_15s0048g02140.t01	Wine grape	mitochondrion	72.97	10.17
HORVU3Hr1G044640.3	Barley	mitochondrion	59.46	9.13
Solyc01g056340.2.1	Tomato	mitochondrion	62.16	8.8
Zm00001d024743_P001	Maize	cytosol	13.51	8.62
EES13430	Sorghum	mitochondrion	59.46	8.61
Os01t0104600-01	Rice	mitochondrion	58.11	8.41
TraesCS3A01G194600.1	Wheat	mitochondrion	58.11	8.41
TraesCS3B01G231100.1	Wheat	mitochondrion	58.11	8.41
Zm00001d009288_P014	Maize	mitochondrion	58.11	8.38
Zm00001d020989_P011	Maize	plastid	60.81	8.36
TraesCS4D01G180900.3	Wheat	mitochondrion	56.76	8.22
CDY05087	Canola	plastid	52.7	7.28
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	52.7	7.26
CDX90747	Canola	mitochondrion, nucleus, plastid	52.7	7.26
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	52.7	7.18
TraesCS4A01G125100.1	Wheat	plastid	54.05	7.08
Zm00001d040485_P001	Maize	mitochondrion	13.51	6.71
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	6.76	1.72
PGSC0003DMT400080769	Potato	cytosol	5.41	1.35

Protein Annotations

EMBL:ACUP02008046	EnsemblPlants:KRH18185	EnsemblPlantsGene:GLYMA_13G043200	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737
ProteinID:KRH18185	ProteinID:KRH18185.1	SEG:seg	UniParc:UPI0002952910	UniProt:K7LXX5	MapMan:19.2.2.8.3.3.2

Description

hypothetical protein

Coordinates

chr13:-:13656559..13656872

Molecular Weight (calculated)

8565.0 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.066

Length

74 amino acids

Sequence
(BLAST)

1: MDTTEIVSFY QNSPDELYLL FEQFCDHFHA TSRNSMYMNF ISSHSNNIHA LEQLWSIKDK ASSSAQVVLL VVSF

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.