CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	KRH25071	AT4G05420.1	16792691
AT4G10180.1	KRH43086	AT4G05420.1	16792691
AT4G10180.1	KRH59212	AT4G05420.1	16792691
AT4G10180.1	KRH59213	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77746	Soybean	mitochondrion	98.51	98.51
KRH15950	Soybean	cytosol	72.76	97.26
KRH18185	Soybean	nucleus	12.31	89.19
VIT_15s0048g02140.t01	Wine grape	mitochondrion	83.4	84.18
Solyc01g056340.2.1	Tomato	mitochondrion	76.68	78.59
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	32.84	73.03
PGSC0003DMT400080769	Potato	cytosol	39.93	72.05
CDY05087	Canola	plastid	71.08	71.08
EES13430	Sorghum	mitochondrion	67.72	71.04
CDX90747	Canola	mitochondrion, nucleus, plastid	70.9	70.76
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	70.71	70.58
TraesCS3B01G231100.1	Wheat	mitochondrion	66.98	70.25
Os01t0104600-01	Rice	mitochondrion	66.79	70.06
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	70.9	69.98
TraesCS3A01G194600.1	Wheat	mitochondrion	66.6	69.86
HORVU3Hr1G044640.3	Barley	mitochondrion	61.38	68.26
TraesCS4D01G180900.3	Wheat	mitochondrion	64.93	68.1
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	36.01	66.32
Zm00001d020989_P011	Maize	plastid	65.67	65.43
TraesCS4A01G125100.1	Wheat	plastid	64.55	61.24
Zm00001d009288_P014	Maize	mitochondrion	58.02	60.62
Zm00001d040485_P001	Maize	mitochondrion	13.81	49.66
Zm00001d024743_P001	Maize	cytosol	10.07	46.55

Protein Annotations

EMBL:ACUP02006733	EnsemblPlants:KRH27796	EnsemblPlantsGene:GLYMA_11G014600	EntrezGene:100801685	GO:GO:0003674	GO:GO:0003824
InterPro:6-hairpin_glycosidase_sf	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737	ProteinID:KRH27796	ProteinID:KRH27796.1
SUPFAM:SSF48208	UniParc:UPI00023CE23D	UniProt:I1LG51	MapMan:19.2.2.8.3.3.2	:	:

Description

hypothetical protein

Coordinates

chr11:+:1010021..1017508

Molecular Weight (calculated)

62019.9 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.307

Length

536 amino acids

Sequence
(BLAST)

001: MYRSSNIVAR IFDRQICTPA PGTSVHHARR FYENLVPSYT VYEVECPDHS FRKFTDDGQY LISFSRNHQE LIVYRPRWLS FSCKDEDCDK HDLPSRAKRF
101: DSFFSQLYCV PLASCNELIC KDFFLYMESN QLGLFATSTA QIHDAPAVGG AVHGVPSIEK ITFLLLRLED GEILDKKVFS NDFVNLTHNM GVFLYDDLLA
201: IVSLRYQTIH ILQIRDSGNL VDVRAIGEFC REDDELFLNS NAQGMALSDK NKQLQLPGNH IENHLHQGQP NLGNSFLSGI KQRLLSFIFQ GLWNEERDDT
301: LRIQRLRKKF YFHFQDYVDL IIWKVQFLDR HHLLIKFGSV DGGVSRNADH HPAFVAVYNM DTTEIVSFYQ NSPDELYLLF EQFCDHFHAT SRNSMYMNFI
401: SSHSNNIHAL EQLRSIKDKA SSSAQFVKKM LASLPFSCQS QSPSPYFDQS LFRFDDKLIS ATDRHRQSTD HPIKFILRRH PYSLKFKIKP GPEAGSMDGR
501: AKKISSFLFH PILPLALSVQ QTLFLQPSVV NIHFRR

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.