Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- peroxisome 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10180.1 | CDY68484 | AT4G05420.1 | 16792691 |
| AT4G10180.1 | CDY69266 | AT4G05420.1 | 16792691 |
| AT4G10180.1 | CDY69930 | AT4G05420.1 | 16792691 |
| AT4G10180.1 | CDY70585 | AT4G05420.1 | 16792691 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90747 | Canola | mitochondrion, nucleus, plastid | 97.95 | 97.77 |
| AT4G10180.1 | Thale cress | mitochondrion, nucleus, peroxisome | 87.5 | 86.37 |
| Solyc01g056340.2.1 | Tomato | mitochondrion | 72.2 | 74.0 |
| VIT_15s0048g02140.t01 | Wine grape | mitochondrion | 71.83 | 72.5 |
| KRH77746 | Soybean | mitochondrion | 71.64 | 71.64 |
| KRH27796 | Soybean | mitochondrion | 71.08 | 71.08 |
| GSMUA_Achr7P07400_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 31.9 | 70.95 |
| KRH15950 | Soybean | cytosol | 50.93 | 68.08 |
| EES13430 | Sorghum | mitochondrion | 62.87 | 65.95 |
| Os01t0104600-01 | Rice | mitochondrion | 62.13 | 65.17 |
| PGSC0003DMT400080769 | Potato | cytosol | 36.01 | 64.98 |
| TraesCS3B01G231100.1 | Wheat | mitochondrion | 61.94 | 64.97 |
| TraesCS3A01G194600.1 | Wheat | mitochondrion | 61.57 | 64.58 |
| HORVU3Hr1G044640.3 | Barley | mitochondrion | 56.72 | 63.07 |
| TraesCS4D01G180900.3 | Wheat | mitochondrion | 59.89 | 62.82 |
| Zm00001d020989_P011 | Maize | plastid | 61.94 | 61.71 |
| GSMUA_Achr7P07410_001 | Banana | cytosol, mitochondrion | 33.02 | 60.82 |
| TraesCS4A01G125100.1 | Wheat | plastid | 59.7 | 56.64 |
| Zm00001d009288_P014 | Maize | mitochondrion | 54.1 | 56.53 |
| KRH18185 | Soybean | nucleus | 7.28 | 52.7 |
| Zm00001d040485_P001 | Maize | mitochondrion | 14.55 | 52.35 |
| Zm00001d024743_P001 | Maize | cytosol | 11.19 | 51.72 |
Protein Annotations
| EnsemblPlants:CDY05087 | EnsemblPlantsGene:GSBRNA2T00119850001 | GO:A0A078EVV4 | GO:GO:0003674 | GO:GO:0003824 | InterPro:6-hairpin_glycosidase_sf |
| InterPro:De-etiolated_protein_1_Det1 | PANTHER:PTHR13374 | PFAM:PF09737 | ProteinID:CDY05087 | ProteinID:CDY05087.1 | SEG:seg |
| SUPFAM:SSF48208 | UniParc:UPI0004EEB564 | MapMan:19.2.2.8.3.3.2 | : | : | : |
Description
BnaC03g28850D
Coordinates
chrLK031959:+:547643..550582
Molecular Weight (calculated)
61933.5 Da
IEP (calculated)
7.696
GRAVY (calculated)
-0.343
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSSNVTSR VFERQIRSSP PGASVNRARK FYENLVPSHT LYDVECPDHC FRKFTEDGLF LISFSRNHQE LVVYRPSWLT YTSDSDDTLP PLPRRSSRFD
101: SFFTQLYSVN LASANELICK DFFLYFPSRR FGLFATSTAQ IHDSAPSPGA VPGVPSIDKI TFVLLRLDDG VVLDERVFLH DFVNLAYNMG VFMYDDLLAI
201: LSLRYQKIHL LQIRDSGHLV DARAIGYFCR EDDELFLNSN SQAMMMTTTQ DKNKQQDRED DGENGLRHTQ PNAENSFLSG IKQRLLSFIF REIWNEEPDN
301: TMRVQSLKKK FYFHFQDYVD LIIWKVQFLD RHHLLIKFGS VDGGVGRNAD HLPAFFAVYN METTDIVAFY QNSAEDLYQL FEQFSDHFTV SSSSPFMNFV
401: TSHSNSVHAL EQLKYLKNKS NSFSQFVKKM LVSLPFSCQS QSPSPYFDQS LFRFDEKLIS AADRHRQSSD NPIKFISRRK PETLKFKIKP GPECGSADGR
501: SKKICSFLFH PHLPLAISIQ QTLFMPPSVV NIHFRR
101: SFFTQLYSVN LASANELICK DFFLYFPSRR FGLFATSTAQ IHDSAPSPGA VPGVPSIDKI TFVLLRLDDG VVLDERVFLH DFVNLAYNMG VFMYDDLLAI
201: LSLRYQKIHL LQIRDSGHLV DARAIGYFCR EDDELFLNSN SQAMMMTTTQ DKNKQQDRED DGENGLRHTQ PNAENSFLSG IKQRLLSFIF REIWNEEPDN
301: TMRVQSLKKK FYFHFQDYVD LIIWKVQFLD RHHLLIKFGS VDGGVGRNAD HLPAFFAVYN METTDIVAFY QNSAEDLYQL FEQFSDHFTV SSSSPFMNFV
401: TSHSNSVHAL EQLKYLKNKS NSFSQFVKKM LVSLPFSCQS QSPSPYFDQS LFRFDEKLIS AADRHRQSSD NPIKFISRRK PETLKFKIKP GPECGSADGR
501: SKKICSFLFH PHLPLAISIQ QTLFMPPSVV NIHFRR
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
Arabidopsis Description
DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]
SUBAcon: [mitochondrion,peroxisome,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.