Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 88.89 | 88.89 |
| CDY70585 | Canola | plastid | 28.93 | 88.73 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 40.31 | 87.8 |
| KRH43086 | Soybean | nucleus | 16.16 | 86.7 |
| Solyc02g021650.2.1 | Tomato | nucleus | 87.14 | 86.67 |
| KRH25071 | Soybean | nucleus | 47.38 | 86.43 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 42.24 | 85.98 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 85.86 | 85.94 |
| CDY69266 | Canola | nucleus | 43.16 | 85.77 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 85.4 | 85.64 |
| KRH59212 | Soybean | cytosol, nucleus | 41.6 | 84.99 |
| KXG22678 | Sorghum | nucleus | 84.66 | 84.66 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 84.48 | 84.4 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 84.48 | 84.4 |
| TraesCS1D01G445700.1 | Wheat | unclear | 84.39 | 84.31 |
| Zm00001d039165_P046 | Maize | nucleus | 84.39 | 84.08 |
| CDY69930 | Canola | plastid | 35.81 | 83.16 |
| AT4G21100.1 | Thale cress | nucleus | 82.92 | 83.0 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 82.37 | 81.32 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 84.66 | 80.59 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 80.81 | 80.07 |
| CDX76416 | Canola | cytosol | 81.91 | 79.08 |
| Bra020884.1-P | Field mustard | cytosol | 81.82 | 69.5 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 64.65 | 68.09 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 67.77 | 67.89 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 7.25 | 67.52 |
| HORVU3Hr1G050820.11 | Barley | plastid | 68.32 | 65.72 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 10.28 | 56.28 |
| PGSC0003DMT400009595 | Potato | nucleus | 11.48 | 47.89 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 13.87 | 47.78 |
| CDY54326 | Canola | cytosol | 8.45 | 40.17 |
| GSMUA_Achr9P30340_001 | Banana | cytosol | 16.07 | 25.0 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 20.29 | 22.62 |
| GSMUA_Achr9P30350_001 | Banana | mitochondrion | 5.51 | 20.83 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 18.92 | 15.26 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr8G07200_001 | EnsemblPlants:GSMUA_Achr8P07200_001 | EnsemblPlants:GSMUA_Achr8T07200_001 | InterPro:IPR015943 | UniProt:M0TNC3 | PFAM:PF03178 |
| PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | SUPFAM:SSF50978 | UniParc:UPI0002966455 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
DNA damage-binding protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07200_001]
Coordinates
chr8:-:4734646..4744926
Molecular Weight (calculated)
121116.0 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.076
Length
1089 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVWNYVVTA HKPTNVTHSC VGNFTSPQEL NLIIAKCTRI EIHLLTPHGL QPMLDVPIYG RIATLELFRP HGEPQDFLFI ATERYKFCVL QWDAETSELI
0101: TRAMGDVSDR IGRPTDNGQI GLIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCLKPTIVVL YQDNKDARHA KTYEIALKDK
0201: DFVEGPLSHT NLDNGAGILI PVPMPLGGVI IIGEETIVYC SVSAFKAIPI RPSITRAYGR VDADGSRYLL GDNAGLLHLL VITHERERVT GLKIEHLGET
0301: SVASTISYLD NAVVYIGSSY GDSQLIKLNL QPDAKGSYVE VLEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GLWSLRSSTN DPYDTFLVVS FINETRVLAM NMDDELEESE IEGFCAEAQT LFCQNAIHDQ LVQVTANSVR LVSSTTRELL HEWNAPSGYS VNVATANASQ
0501: VLLATGGGHL VYLEIGNGKL AEVKHVQLDY EISCLDINPS GENPNYSTLA AVGMWTDISV RIFSLPSLEL LAKENLGGEI IPRSVLLCTF EGVSYLLCTL
0601: GDGHLLNFLL NLSTGELSNR KKVSLGTQPI MLRTFSSKDT THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIAKE GELSIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQSRTFAIC SLKNCQTSNE ETEMHFVRLL DDQTFEFIST YPLDTYEYGC SIISCSFSDD NNAYYCVGTA YVLPEENEPS
0801: KGRILVFVVE DGKLQLIAEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM LREDGSRELQ AECGHHGHIL ALYVQTRGDF IVVGDLMKSI SLLLYKHEEG
0901: AIEELARDYN ANWMSAVEIL DDDVFLGAEN NYNLFTVRKN SDAATDEERG RLEVVGEYHL GEFVNRFRHG SLVMRLPDLE AGHIPTVIFG TINGVIGVVA
1001: SLPHDQYVFL EKLQANLVKV IKGVGGLSHE QWRSFNNEKK TVDARNFLDG DLIESFLDLS RSRMDEIASS MGVPLEELCK RVEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GLIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCLKPTIVVL YQDNKDARHA KTYEIALKDK
0201: DFVEGPLSHT NLDNGAGILI PVPMPLGGVI IIGEETIVYC SVSAFKAIPI RPSITRAYGR VDADGSRYLL GDNAGLLHLL VITHERERVT GLKIEHLGET
0301: SVASTISYLD NAVVYIGSSY GDSQLIKLNL QPDAKGSYVE VLEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GLWSLRSSTN DPYDTFLVVS FINETRVLAM NMDDELEESE IEGFCAEAQT LFCQNAIHDQ LVQVTANSVR LVSSTTRELL HEWNAPSGYS VNVATANASQ
0501: VLLATGGGHL VYLEIGNGKL AEVKHVQLDY EISCLDINPS GENPNYSTLA AVGMWTDISV RIFSLPSLEL LAKENLGGEI IPRSVLLCTF EGVSYLLCTL
0601: GDGHLLNFLL NLSTGELSNR KKVSLGTQPI MLRTFSSKDT THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIAKE GELSIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQSRTFAIC SLKNCQTSNE ETEMHFVRLL DDQTFEFIST YPLDTYEYGC SIISCSFSDD NNAYYCVGTA YVLPEENEPS
0801: KGRILVFVVE DGKLQLIAEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM LREDGSRELQ AECGHHGHIL ALYVQTRGDF IVVGDLMKSI SLLLYKHEEG
0901: AIEELARDYN ANWMSAVEIL DDDVFLGAEN NYNLFTVRKN SDAATDEERG RLEVVGEYHL GEFVNRFRHG SLVMRLPDLE AGHIPTVIFG TINGVIGVVA
1001: SLPHDQYVFL EKLQANLVKV IKGVGGLSHE QWRSFNNEKK TVDARNFLDG DLIESFLDLS RSRMDEIASS MGVPLEELCK RVEELTRLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.