Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P22850_001 | |
| GSMUA_Achr7P01270_001 | |
| GSMUA_Achr8P07200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31160.1 | GSMUA_Achr8P07200_001 | AT4G05420.1 | 18552200 |
| AT4G31160.1 | GSMUA_Achr4P22850_001 | AT5G46210.1 | 18552200 |
| AT4G31160.1 | GSMUA_Achr7P01270_001 | AT5G46210.1 | 18552200 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P23160_001 | Banana | plasma membrane, plastid, vacuole | 64.98 | 63.08 |
| TraesCS2B01G630100.1 | Wheat | nucleus | 51.2 | 55.99 |
| VIT_04s0008g03060.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.0 | 53.23 |
| Solyc08g074370.2.1 | Tomato | nucleus | 59.39 | 52.47 |
| KRH61892 | Soybean | cytosol | 61.25 | 52.45 |
| KRH52554 | Soybean | nucleus | 60.53 | 52.31 |
| HORVU2Hr1G126010.3 | Barley | cytosol | 57.64 | 51.81 |
| TraesCS2D01G576800.1 | Wheat | cytosol | 58.3 | 50.95 |
| TraesCS2A01G566600.1 | Wheat | nucleus | 58.24 | 50.89 |
| EES13157 | Sorghum | cytosol | 58.54 | 50.78 |
| Zm00001d026691_P004 | Maize | cytosol | 57.88 | 50.23 |
| Os04t0691200-00 | Rice | cytosol | 19.07 | 50.08 |
| Zm00001d002933_P014 | Maize | cytosol | 56.92 | 49.74 |
| CDX72295 | Canola | cytosol, nucleus, plastid | 50.9 | 48.26 |
| CDY13413 | Canola | nucleus | 50.6 | 48.11 |
| CDY36454 | Canola | nucleus | 51.93 | 46.93 |
| AT4G31160.1 | Thale cress | cytosol, nucleus, plasma membrane | 52.71 | 46.52 |
| CDY23283 | Canola | nucleus | 51.5 | 46.37 |
| Bra024021.1-P | Field mustard | nucleus | 50.0 | 46.17 |
| Bra010248.1-P | Field mustard | nucleus | 51.02 | 44.51 |
| KRH16085 | Soybean | cytosol | 18.65 | 43.3 |
| VIT_15s0021g02350.t01 | Wine grape | nucleus | 5.48 | 26.45 |
| CDY03208 | Canola | nucleus | 2.77 | 23.71 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr3G22370_001 | EnsemblPlants:GSMUA_Achr3P22370_001 | EnsemblPlants:GSMUA_Achr3T22370_001 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR015943 |
| InterPro:LisH | UniProt:M0SGV3 | PFscan:PS50896 | PANTHER:PTHR13129 | SMART:SM00320 | SMART:SM00667 |
| SUPFAM:SSF48371 | SUPFAM:SSF50978 | UniParc:UPI000294D106 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
DDB1- and CUL4-associated factor homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22370_001]
Coordinates
chr3:+:23336294..23345340
Molecular Weight (calculated)
181027.0 Da
IEP (calculated)
5.714
GRAVY (calculated)
-0.229
Length
1662 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYHPYRSLIG LIHITPISSG IYLQETANSP FNNVRTSHNI GKLGNLVRDN DEFYELTSSK FLTESRFPPS IRAAAARLLL SCSSSWMYPH VFDDAVLDNI
0101: KIWVNEDTPV YDDDSIWKHE LGEDKPTDSE MLRTYATGLL ALSLPSSSQV VEDMLTSGLS AKLMRYLRTQ MFGDSSSGQR DVTSLVETKR ASASSSTKDR
0201: DETRGRSCQV SGVAHLESSR IGDQRLSGDP TADKGSVKND GTGQVCGDDT WGDGDGKSKY GERDIAGKSG QDDDLDDSKG VDLLKQGLNH GFPRSTAKGN
0301: ISGGTLENLR AASQSSGLYI GGSGQLFGER NLAKHEDIEK VLDTDNKLSI FYCDDLVIGK DNDERLLDCN IGKKDISEMV KKAIRAAEAE ARTANAPEEA
0401: IKAAGDAAAE LVKTAATEAW KSKNDEEAVV SAASEAASTV VDAAIATEIS RNANQLSKDI IELKTLEDKG NEEIEIFVIL ENETLAKLRV KYSIRCLGIL
0501: GEYVEALGPI LHEKGVDVCL AFLQCSFKDD ETPDQLALLA EVLNLICALA AHRKFSALFV DRGGIQKLLS VRRVLHTFFG LSSCLFTIGS LQAIMERVCA
0601: LPSNVVQQIV ELALQLLECP QDQARKNAAI FFAAAFVFRA ILDSFDVQEG LHKMLNILHG AASVRSGGNS GTVGIPIVPA RNDRSSAEVL TASEKQIAYH
0701: TCVALRQYFR AHLIVLVDSL RPNKSSRGIA RSTSSARASY KPLDISNEAM DSVFIQIQRD RKLGPAFVRA RWPLVDKFLA SNGHITMLEL CQAPPVERYL
0801: HDLAQYALGV LHIATFVKDS RKLIINATLS NNRVGMAVIL DAANGAGYVD PEVIHPALNV LVNLVCPPPS ISIKPSVSAQ GQQPVSLQTL NGPSENRERH
0901: SERNNSDSCS SSTPAPAISA GVVGDRRISL GSGSGCAGLA AQLEQGYRQA REAVRANNGI KVLLHLLNPR MITPPAALDC IRALACRVLL GLARDEAIAH
1001: ILTRLQVGKK LSELIRDLSS QASGTEQARW QSELVQVSIE LIAIVTNSGR ASTLAATDAA APTLRRIERA AIAAATPITY HSRELLLLIH EHLVASGLKA
1101: TATLLQKEAN VTKSAAPCGG TETPSVSVFK STADTEVTFK TPICLPMKRK FLELKEPSSA SPAKHLSTED FSFQSPICQT PYFGRRNFVT TDAEGLLPIV
1201: NHSPRGALSK TSCSNISIDH SDDIQCQVTP GAPTTPVAQL GLPGNSQYEK TERMTLDSLV VQYLKHQHRQ CPAPITTLPP LSLLQPHVCP EPSRSLNAPA
1301: NITARVSSRE FRKKYGGIHA HRRDRQFIYS RYRPCRTCRA DAALLTCITF LGESSRIATG SHSGELKIFD SNSGNLLESQ TCHQTCGPLH SFEGCKAARF
1401: SHSGTSFAAL SSDTSRREVL LYDSLIHFSP VDMMMLWNGI LWDRRSSNAI HQFDQFTDYG GGGFHPAGNE VIINSEVWDL RKFKLLRTVP SLDQTVITFN
1501: GGGDVIYAIL RRNLEEITSA INTRRVRHPL FPAFRTIDAA NYSDIGTVQV DRCILDFATD PTDTFVGVIA MDDHEEMFSS ARLYEVGRKR ATDDDSDPDD
1601: GDIDSVDELD DGDLNEDELD FEGGQGLLEI MAEGDEDVED SEVMESFSSG EEEDFAGHGF AL
0101: KIWVNEDTPV YDDDSIWKHE LGEDKPTDSE MLRTYATGLL ALSLPSSSQV VEDMLTSGLS AKLMRYLRTQ MFGDSSSGQR DVTSLVETKR ASASSSTKDR
0201: DETRGRSCQV SGVAHLESSR IGDQRLSGDP TADKGSVKND GTGQVCGDDT WGDGDGKSKY GERDIAGKSG QDDDLDDSKG VDLLKQGLNH GFPRSTAKGN
0301: ISGGTLENLR AASQSSGLYI GGSGQLFGER NLAKHEDIEK VLDTDNKLSI FYCDDLVIGK DNDERLLDCN IGKKDISEMV KKAIRAAEAE ARTANAPEEA
0401: IKAAGDAAAE LVKTAATEAW KSKNDEEAVV SAASEAASTV VDAAIATEIS RNANQLSKDI IELKTLEDKG NEEIEIFVIL ENETLAKLRV KYSIRCLGIL
0501: GEYVEALGPI LHEKGVDVCL AFLQCSFKDD ETPDQLALLA EVLNLICALA AHRKFSALFV DRGGIQKLLS VRRVLHTFFG LSSCLFTIGS LQAIMERVCA
0601: LPSNVVQQIV ELALQLLECP QDQARKNAAI FFAAAFVFRA ILDSFDVQEG LHKMLNILHG AASVRSGGNS GTVGIPIVPA RNDRSSAEVL TASEKQIAYH
0701: TCVALRQYFR AHLIVLVDSL RPNKSSRGIA RSTSSARASY KPLDISNEAM DSVFIQIQRD RKLGPAFVRA RWPLVDKFLA SNGHITMLEL CQAPPVERYL
0801: HDLAQYALGV LHIATFVKDS RKLIINATLS NNRVGMAVIL DAANGAGYVD PEVIHPALNV LVNLVCPPPS ISIKPSVSAQ GQQPVSLQTL NGPSENRERH
0901: SERNNSDSCS SSTPAPAISA GVVGDRRISL GSGSGCAGLA AQLEQGYRQA REAVRANNGI KVLLHLLNPR MITPPAALDC IRALACRVLL GLARDEAIAH
1001: ILTRLQVGKK LSELIRDLSS QASGTEQARW QSELVQVSIE LIAIVTNSGR ASTLAATDAA APTLRRIERA AIAAATPITY HSRELLLLIH EHLVASGLKA
1101: TATLLQKEAN VTKSAAPCGG TETPSVSVFK STADTEVTFK TPICLPMKRK FLELKEPSSA SPAKHLSTED FSFQSPICQT PYFGRRNFVT TDAEGLLPIV
1201: NHSPRGALSK TSCSNISIDH SDDIQCQVTP GAPTTPVAQL GLPGNSQYEK TERMTLDSLV VQYLKHQHRQ CPAPITTLPP LSLLQPHVCP EPSRSLNAPA
1301: NITARVSSRE FRKKYGGIHA HRRDRQFIYS RYRPCRTCRA DAALLTCITF LGESSRIATG SHSGELKIFD SNSGNLLESQ TCHQTCGPLH SFEGCKAARF
1401: SHSGTSFAAL SSDTSRREVL LYDSLIHFSP VDMMMLWNGI LWDRRSSNAI HQFDQFTDYG GGGFHPAGNE VIINSEVWDL RKFKLLRTVP SLDQTVITFN
1501: GGGDVIYAIL RRNLEEITSA INTRRVRHPL FPAFRTIDAA NYSDIGTVQV DRCILDFATD PTDTFVGVIA MDDHEEMFSS ARLYEVGRKR ATDDDSDPDD
1601: GDIDSVDELD DGDLNEDELD FEGGQGLLEI MAEGDEDVED SEVMESFSSG EEEDFAGHGF AL
0001: MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
Arabidopsis Description
DCAF1DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M086]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.