Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 4
- golgi 3
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P22850_001 | |
| GSMUA_Achr7P01270_001 | |
| GSMUA_Achr8P07200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31160.1 | GSMUA_Achr8P07200_001 | AT4G05420.1 | 18552200 |
| AT4G31160.1 | GSMUA_Achr4P22850_001 | AT5G46210.1 | 18552200 |
| AT4G31160.1 | GSMUA_Achr7P01270_001 | AT5G46210.1 | 18552200 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P22370_001 | Banana | cytosol | 63.08 | 64.98 |
| Os04t0691200-00 | Rice | cytosol | 22.31 | 60.35 |
| TraesCS2B01G630100.1 | Wheat | nucleus | 49.71 | 55.99 |
| VIT_04s0008g03060.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.43 | 55.21 |
| KRH52554 | Soybean | nucleus | 60.98 | 54.29 |
| KRH61892 | Soybean | cytosol | 60.86 | 53.68 |
| Solyc08g074370.2.1 | Tomato | nucleus | 58.94 | 53.64 |
| HORVU2Hr1G126010.3 | Barley | cytosol | 56.25 | 52.08 |
| EES13157 | Sorghum | cytosol | 56.66 | 50.63 |
| TraesCS2D01G576800.1 | Wheat | cytosol | 56.19 | 50.58 |
| TraesCS2A01G566600.1 | Wheat | nucleus | 56.02 | 50.42 |
| Zm00001d026691_P004 | Maize | cytosol | 56.37 | 50.39 |
| Zm00001d002933_P014 | Maize | cytosol | 54.09 | 48.69 |
| KRH16085 | Soybean | cytosol | 20.21 | 48.32 |
| CDX72295 | Canola | cytosol, nucleus, plastid | 49.07 | 47.92 |
| AT4G31160.1 | Thale cress | cytosol, nucleus, plasma membrane | 52.51 | 47.74 |
| CDY13413 | Canola | nucleus | 48.66 | 47.65 |
| CDY23283 | Canola | nucleus | 51.28 | 47.56 |
| CDY36454 | Canola | nucleus | 51.05 | 47.53 |
| Bra024021.1-P | Field mustard | nucleus | 48.54 | 46.17 |
| Bra010248.1-P | Field mustard | nucleus | 51.34 | 46.14 |
| VIT_15s0021g02350.t01 | Wine grape | nucleus | 7.89 | 39.24 |
| CDY03208 | Canola | nucleus | 2.63 | 23.2 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr7G23160_001 | EnsemblPlants:GSMUA_Achr7P23160_001 | EnsemblPlants:GSMUA_Achr7T23160_001 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:LisH | UniProt:M0TK02 | PFscan:PS50294 | PFscan:PS50896 | PANTHER:PTHR13129 |
| SMART:SM00320 | SMART:SM00667 | SUPFAM:SSF48371 | SUPFAM:SSF50978 | UniParc:UPI00029650A7 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
DDB1- and CUL4-associated factor homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23160_001]
Coordinates
chr7:-:25466014..25475557
Molecular Weight (calculated)
186255.0 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.291
Length
1712 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLFLLLPHFG SVSSIFFRYL QESVSSPFNN VRASHTIGRL ANLVQENDEF YEAISSKFLS ESRYSTGVRA AAARLILSCS SSWMYPHVFD DDVLDNIKTW
0101: LMEENIDSND DCIWKHVFGE DKPTESEMLT TYATGLLALA LASPGPVVED ILTSGLSAKL MRYLRTRILG DANVGQKNCT YPAEVKHASV ASYLRGRDEN
0201: KLRSREVSDA PRLEGLKAGD EGSSDDSCVH RDCDRVTRQV CSDESRTKGR ISEGNSDSDR VLTSPSSGLR LGGSGRVSRD RNLLKNEDTR KVTDTTNNSV
0301: KLDQEGLVIG EDNDDRLLDC YIGSRDISEM VKKAIGAAEA EARAADAPAE AIKAAGDAAA ELVKTAALEA WNNTKIEEEV ILAASKAASS VVDAAIATEI
0401: SRTANEVNEN LTETKAMEVE GDEMPEDFSI LDKEPLARLR EKYCIQCLQI LGEYVEAFGP ILHEKGVDVC LALLQQSFKE EVLDNLSLLP EVLKLICALA
0501: AHRKFAAVFV DRGGIQKLLS VRRVPQTFFG LSSCLFTIGS LQGIMERVCA LPSDVVSKVI ELALQLLVCP QDQARKNAAI FFAAAFVFRA VLDSFDAHDG
0601: LQKMLNLLHG AASVRSVDRF LASNGHITML ELCQAPPVER YLHDLAQYAL GVLHIVTFIP HSRKLIINAT LSNNRVGMAV ILDAANGAGF VDPEVIHPAL
0701: NVLVNLVCPP PSISNKSSLS AQGQQPASVQ SSSGHSESRE RFSERHISDR IPFPTQNESR EINSEPNLER SNTTVPLTPS GVVGDRRISL GPGFGCAGLA
0801: AQLEQGYHQA REAVRANNGI KVLLHLLHPR MITPPAALDC IRALACRVLL GLARDETIAH ILTKLQVGKK LSELIRDSGC QAGGTEQGRW QAELVQVAIE
0901: LIAIVTNSGR ASTLAATDAA APTLRRIERA AIAAATRITY HSRELLLLIH EHLQRSGLTA TAALLQKEAD LTPLPSLGVP SPPLHQTSVQ DTSSVQLQWP
1001: SGRASCGFSS DMKMSPRDED TGLKPESTVM TSKKKTLTFS SSFSQGKSHL PSHSSSVVKS SVVNGHTAHE GLETTPPSAC KSNADIEPPS KTPNLLPVKR
1101: KLNELKDLFS ATPAKRLLMS DLASHSATNQ MSTSGQRNHL SNPNCLSPHA NTTPRDRFSR GACGSLSGNN IDDIRHPNSY GASTAPVAQS GLPADQQPGN
1201: TERMTLDSLV VQYLKNQHRQ CPAPITTLPP LSLLHPHVCP EPSRSLNAPA NVTARVSTRE FMKQYGGIHA HRRDRQFVYS RFRPFRTCRD DAALLTCITY
1301: LGDSSHIATG SHSGELKIFD SNSGNVLESQ TCHQTPVTLV QSASCGGNQF VLSSGLYDVK LWDASSISTG PLHSFEGCKA ARFSHSGTNF AALSSDTSRR
1401: EVLLYDVQTY NVELRLPDSS SNHPGIVRGH AQSLIHFSPL DTLLLWNGIL WDRRSSSAVH RFDQFTDYGG GGFHPAGNEI IINSEVWDLR KFKLLRTVPS
1501: LDQTVITFNG GGDVIYAILR RNLEDVMSAV NTRRVRHPLF PAFRTIDAVN YADIATVQVD RCVLDLAVDP TDSFVGIIAM DDHDEMFSSA RLYEVGRKRP
1601: TDDDSDPDDG GETDEDDEEN EESEADVDAI LEAELDGDGD SDSDDMSNDE DDEDVDSGDE LDEDGDFNLG GADFEGGRGL LEIMAEGDEE GDSDEGELVE
1701: SLSSGDEGDF TF
0101: LMEENIDSND DCIWKHVFGE DKPTESEMLT TYATGLLALA LASPGPVVED ILTSGLSAKL MRYLRTRILG DANVGQKNCT YPAEVKHASV ASYLRGRDEN
0201: KLRSREVSDA PRLEGLKAGD EGSSDDSCVH RDCDRVTRQV CSDESRTKGR ISEGNSDSDR VLTSPSSGLR LGGSGRVSRD RNLLKNEDTR KVTDTTNNSV
0301: KLDQEGLVIG EDNDDRLLDC YIGSRDISEM VKKAIGAAEA EARAADAPAE AIKAAGDAAA ELVKTAALEA WNNTKIEEEV ILAASKAASS VVDAAIATEI
0401: SRTANEVNEN LTETKAMEVE GDEMPEDFSI LDKEPLARLR EKYCIQCLQI LGEYVEAFGP ILHEKGVDVC LALLQQSFKE EVLDNLSLLP EVLKLICALA
0501: AHRKFAAVFV DRGGIQKLLS VRRVPQTFFG LSSCLFTIGS LQGIMERVCA LPSDVVSKVI ELALQLLVCP QDQARKNAAI FFAAAFVFRA VLDSFDAHDG
0601: LQKMLNLLHG AASVRSVDRF LASNGHITML ELCQAPPVER YLHDLAQYAL GVLHIVTFIP HSRKLIINAT LSNNRVGMAV ILDAANGAGF VDPEVIHPAL
0701: NVLVNLVCPP PSISNKSSLS AQGQQPASVQ SSSGHSESRE RFSERHISDR IPFPTQNESR EINSEPNLER SNTTVPLTPS GVVGDRRISL GPGFGCAGLA
0801: AQLEQGYHQA REAVRANNGI KVLLHLLHPR MITPPAALDC IRALACRVLL GLARDETIAH ILTKLQVGKK LSELIRDSGC QAGGTEQGRW QAELVQVAIE
0901: LIAIVTNSGR ASTLAATDAA APTLRRIERA AIAAATRITY HSRELLLLIH EHLQRSGLTA TAALLQKEAD LTPLPSLGVP SPPLHQTSVQ DTSSVQLQWP
1001: SGRASCGFSS DMKMSPRDED TGLKPESTVM TSKKKTLTFS SSFSQGKSHL PSHSSSVVKS SVVNGHTAHE GLETTPPSAC KSNADIEPPS KTPNLLPVKR
1101: KLNELKDLFS ATPAKRLLMS DLASHSATNQ MSTSGQRNHL SNPNCLSPHA NTTPRDRFSR GACGSLSGNN IDDIRHPNSY GASTAPVAQS GLPADQQPGN
1201: TERMTLDSLV VQYLKNQHRQ CPAPITTLPP LSLLHPHVCP EPSRSLNAPA NVTARVSTRE FMKQYGGIHA HRRDRQFVYS RFRPFRTCRD DAALLTCITY
1301: LGDSSHIATG SHSGELKIFD SNSGNVLESQ TCHQTPVTLV QSASCGGNQF VLSSGLYDVK LWDASSISTG PLHSFEGCKA ARFSHSGTNF AALSSDTSRR
1401: EVLLYDVQTY NVELRLPDSS SNHPGIVRGH AQSLIHFSPL DTLLLWNGIL WDRRSSSAVH RFDQFTDYGG GGFHPAGNEI IINSEVWDLR KFKLLRTVPS
1501: LDQTVITFNG GGDVIYAILR RNLEDVMSAV NTRRVRHPLF PAFRTIDAVN YADIATVQVD RCVLDLAVDP TDSFVGIIAM DDHDEMFSSA RLYEVGRKRP
1601: TDDDSDPDDG GETDEDDEEN EESEADVDAI LEAELDGDGD SDSDDMSNDE DDEDVDSGDE LDEDGDFNLG GADFEGGRGL LEIMAEGDEE GDSDEGELVE
1701: SLSSGDEGDF TF
0001: MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
Arabidopsis Description
DCAF1DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M086]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.