Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021470.2.1 | |
| Solyc02g021650.2.1 | |
| Solyc02g070460.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31160.1 | Solyc02g021650.2.1 | AT4G05420.1 | 18552200 |
| AT4G31160.1 | Solyc02g021470.2.1 | AT5G46210.1 | 18552200 |
| AT4G31160.1 | Solyc02g070460.2.1 | AT5G46210.1 | 18552200 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g03060.t01 | Wine grape | cytosol, nucleus, plasma membrane | 70.23 | 67.16 |
| KRH52554 | Soybean | nucleus | 66.29 | 64.85 |
| KRH61892 | Soybean | cytosol | 66.72 | 64.66 |
| GSMUA_Achr3P22370_001 | Banana | cytosol | 52.47 | 59.39 |
| GSMUA_Achr7P23160_001 | Banana | plasma membrane, plastid, vacuole | 53.64 | 58.94 |
| TraesCS2B01G630100.1 | Wheat | nucleus | 46.15 | 57.11 |
| CDY13413 | Canola | nucleus | 52.53 | 56.52 |
| CDX72295 | Canola | cytosol, nucleus, plastid | 52.42 | 56.25 |
| KRH16085 | Soybean | cytosol | 21.32 | 56.01 |
| Os04t0691200-00 | Rice | cytosol | 18.77 | 55.77 |
| CDY36454 | Canola | nucleus | 54.28 | 55.52 |
| CDY23283 | Canola | nucleus | 54.44 | 55.47 |
| AT4G31160.1 | Thale cress | cytosol, nucleus, plasma membrane | 55.4 | 55.34 |
| Bra024021.1-P | Field mustard | nucleus | 52.31 | 54.67 |
| Bra010248.1-P | Field mustard | nucleus | 54.17 | 53.49 |
| HORVU2Hr1G126010.3 | Barley | cytosol | 52.1 | 53.0 |
| EES13157 | Sorghum | cytosol | 52.63 | 51.67 |
| TraesCS2A01G566600.1 | Wheat | nucleus | 52.1 | 51.52 |
| TraesCS2D01G576800.1 | Wheat | cytosol | 52.1 | 51.52 |
| Zm00001d026691_P004 | Maize | cytosol | 52.42 | 51.49 |
| Zm00001d002933_P014 | Maize | cytosol | 50.29 | 49.74 |
| VIT_15s0021g02350.t01 | Wine grape | nucleus | 7.71 | 42.15 |
| CDY03208 | Canola | nucleus | 2.92 | 28.35 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010154 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0048366 | GO:GO:0048367 |
| GO:GO:0048827 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4CMF7 |
| InterPro:LisH | PFscan:PS50294 | PFscan:PS50896 | PANTHER:PTHR13129 | SMART:SM00320 | SMART:SM00667 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc08g074370.2 | EnsemblPlants:Solyc08g074370.2.1 | UniParc:UPI000276AEEE | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
DDB1- and CUL4-associated factor homolog 1 [Source:Projected from Arabidopsis thaliana (AT4G31160) UniProtKB/Swiss-Prot;Acc:Q9M086]
Coordinates
chr8:-:58487575..58496343
Molecular Weight (calculated)
204873.0 Da
IEP (calculated)
5.144
GRAVY (calculated)
-0.376
Length
1881 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEENGHAAPN NGRSSHNVGR LGNLIRDNDE FFELISSKFL TERRYSVSVK AAAARLLFSC SLTWMYPHVF EDPVLENLKS WTTDDTIRLS GDDHYWKHES
0101: GDRRSSDSEM LKTYSTGLLA VCLASGGQVV EDVLTSGLPA KLMHYLRIRI LGETTTSQRD ATSLLDGKAS STGTGVRARE ECRSRFRQVA ESSHLDIPRV
0201: AEDGLHGDQI LDKDRDRSAS RHMHGDERWT DEEPPDSMAM DDDNCQADGD GEERWHIRDL RDGKAKPGNR SVREDEYDES ARDELSRRRV NRGWTRHRGR
0301: GRVTEGVPDN EAALTSPGSA SRLSGQSRSR NLNRNQELRR APDNKKNLSR TNVDGFGMER DENDECFREC KVGSKDITDL VKKAVGAAET EAKTANAPAE
0401: AVKAAGDAAA EVVKSAAFEE FKKSNDDEAA VLAASKAAST VIDAAIAVEV SRSAISEGES QDIKATAQEA NEDVDEFFIL DSDSLAKLRE KFCIQCLIIL
0501: GEYVEVLGPV LHEKGVDVCI GLLQRNSKHK EGCRLSLLLP DVLKLICALA AHRKFAAVFV DRGGMQKLLA APRAPQTFCG LSSCLFAIGS IQGIMERVCT
0601: LPSSIIHQVV ELALQLLECP QDLARKNSAL FFAASFVFRA VVDAFDAQDG LQKMLNLLQD AALVRSGASS GALTASGSLR SDRSPPEVLT ASEKQIAYHT
0701: CVALRQYFRA HLLLLVDSIR PNKSVRSAGR NIPSVRAASK PLDISNEVMD AVSRLIQKDR RLGPAAVRAR WPVVDKFLNC NGHITMLELC QAPPVERYLH
0801: DLLQYALGVL HIVTLVPYSR KLIVNATLSN DRVGIAVILD AANSAGYVEP EIVEAALNVL VCLVCPPPSI SNKPSVSTQA QQTNAVQSAN TPGVETRDRN
0901: ADRSETRDRN AERILPDRAV NISSQNENRE STLPDRGSTA VPGTSAVSGT SQGPVSTVTS GLVGDRRISL GAGAGCAGLA AQLEQCYRQA REAVRANNGI
1001: KVLLQLLQPR IVTPPAAIDC LRALACRVLL GLARDDTIAH ILTKLQVGKK LSELIRDSGN QTPGSEQNRW QAELAQVAIE LIGVVTNSGR ASSLAATDAA
1101: TPTLRRIERA AIAAATPITY HARELLLLIH EHLQASGLTD TATMLLKEAQ LTPLPSLAAP SSLAHQTSGQ ETSSVQIQWP SGRAPRGFLS AKPKLPPLDE
1201: DGGLKSESIV CSSRRKPLAF SSARSLSSKS FPVEVSPSTS GCKFSNSRKC ATPIATSETP LLSTVKAGGD PDIMFKTPIV LPMKRKLTDL KESGSVSSVK
1301: RLNTGEHTVR SPVCVTPNSF RRSGLPSDTN VPSTPNSTLR EIHNRPGSSA FPTEGDDTPM LSSSQHGLLS DTQPSNAERL TLDSLVVQYL KHQHRQCPAP
1401: ITTLPPLSLL HPHVCPEPKR SLDAPSNVTS RLSTRDFRSL NGGTHGKRKD RQFVYSRFRP WRTCRDDAGV LLTCVSFMGD SSQIAAGTHS GELKIFDTNS
1501: SSILESFTSH QAPLTLLQSY LSVETQLLLS SSSHDVRLWD ATSVSAGPKH SFEGCKAARF SNFGTTFAAL SAEQSRREIL LYDTQTCQVE LKLTDTSNIP
1601: SGRGHMYSLA HFSPSDNMLL WNGVLWDTRG SGPIHRFDQF TDYGGGGFHP AGNEVIINSE VWDLRNFRLL RSVPSLDQTV ITFNASGDVI YAILRRNLED
1701: VMSAFQTRRV KHPLFAAFRT VDAVNYSDIA TIPVDRCVLD FATEPTDSFV GLVTMDDQDE MYSSARVYEI GRRRPTEDDS DPDDAESEDE DEDDDDDIDE
1801: EAILGTDLDG DGESDADDLS NDDDSVSELD DEEDEDGDFI VDGVDFGGGG ILEIVTDGED EDDSELVESF SSGDDDDDDL L
0101: GDRRSSDSEM LKTYSTGLLA VCLASGGQVV EDVLTSGLPA KLMHYLRIRI LGETTTSQRD ATSLLDGKAS STGTGVRARE ECRSRFRQVA ESSHLDIPRV
0201: AEDGLHGDQI LDKDRDRSAS RHMHGDERWT DEEPPDSMAM DDDNCQADGD GEERWHIRDL RDGKAKPGNR SVREDEYDES ARDELSRRRV NRGWTRHRGR
0301: GRVTEGVPDN EAALTSPGSA SRLSGQSRSR NLNRNQELRR APDNKKNLSR TNVDGFGMER DENDECFREC KVGSKDITDL VKKAVGAAET EAKTANAPAE
0401: AVKAAGDAAA EVVKSAAFEE FKKSNDDEAA VLAASKAAST VIDAAIAVEV SRSAISEGES QDIKATAQEA NEDVDEFFIL DSDSLAKLRE KFCIQCLIIL
0501: GEYVEVLGPV LHEKGVDVCI GLLQRNSKHK EGCRLSLLLP DVLKLICALA AHRKFAAVFV DRGGMQKLLA APRAPQTFCG LSSCLFAIGS IQGIMERVCT
0601: LPSSIIHQVV ELALQLLECP QDLARKNSAL FFAASFVFRA VVDAFDAQDG LQKMLNLLQD AALVRSGASS GALTASGSLR SDRSPPEVLT ASEKQIAYHT
0701: CVALRQYFRA HLLLLVDSIR PNKSVRSAGR NIPSVRAASK PLDISNEVMD AVSRLIQKDR RLGPAAVRAR WPVVDKFLNC NGHITMLELC QAPPVERYLH
0801: DLLQYALGVL HIVTLVPYSR KLIVNATLSN DRVGIAVILD AANSAGYVEP EIVEAALNVL VCLVCPPPSI SNKPSVSTQA QQTNAVQSAN TPGVETRDRN
0901: ADRSETRDRN AERILPDRAV NISSQNENRE STLPDRGSTA VPGTSAVSGT SQGPVSTVTS GLVGDRRISL GAGAGCAGLA AQLEQCYRQA REAVRANNGI
1001: KVLLQLLQPR IVTPPAAIDC LRALACRVLL GLARDDTIAH ILTKLQVGKK LSELIRDSGN QTPGSEQNRW QAELAQVAIE LIGVVTNSGR ASSLAATDAA
1101: TPTLRRIERA AIAAATPITY HARELLLLIH EHLQASGLTD TATMLLKEAQ LTPLPSLAAP SSLAHQTSGQ ETSSVQIQWP SGRAPRGFLS AKPKLPPLDE
1201: DGGLKSESIV CSSRRKPLAF SSARSLSSKS FPVEVSPSTS GCKFSNSRKC ATPIATSETP LLSTVKAGGD PDIMFKTPIV LPMKRKLTDL KESGSVSSVK
1301: RLNTGEHTVR SPVCVTPNSF RRSGLPSDTN VPSTPNSTLR EIHNRPGSSA FPTEGDDTPM LSSSQHGLLS DTQPSNAERL TLDSLVVQYL KHQHRQCPAP
1401: ITTLPPLSLL HPHVCPEPKR SLDAPSNVTS RLSTRDFRSL NGGTHGKRKD RQFVYSRFRP WRTCRDDAGV LLTCVSFMGD SSQIAAGTHS GELKIFDTNS
1501: SSILESFTSH QAPLTLLQSY LSVETQLLLS SSSHDVRLWD ATSVSAGPKH SFEGCKAARF SNFGTTFAAL SAEQSRREIL LYDTQTCQVE LKLTDTSNIP
1601: SGRGHMYSLA HFSPSDNMLL WNGVLWDTRG SGPIHRFDQF TDYGGGGFHP AGNEVIINSE VWDLRNFRLL RSVPSLDQTV ITFNASGDVI YAILRRNLED
1701: VMSAFQTRRV KHPLFAAFRT VDAVNYSDIA TIPVDRCVLD FATEPTDSFV GLVTMDDQDE MYSSARVYEI GRRRPTEDDS DPDDAESEDE DEDDDDDIDE
1801: EAILGTDLDG DGESDADDLS NDDDSVSELD DEEDEDGDFI VDGVDFGGGG ILEIVTDGED EDDSELVESF SSGDDDDDDL L
0001: MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
Arabidopsis Description
DCAF1DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M086]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.