Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g03710.t01 | |
| VIT_10s0003g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31160.1 | VIT_10s0003g04360.t01 | AT4G05420.1 | 18552200 |
| AT4G31160.1 | VIT_10s0003g03710.t01 | AT5G46210.1 | 18552200 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52554 | Soybean | nucleus | 71.12 | 72.75 |
| KRH61892 | Soybean | cytosol | 71.43 | 72.39 |
| Solyc08g074370.2.1 | Tomato | nucleus | 67.16 | 70.23 |
| GSMUA_Achr7P23160_001 | Banana | plasma membrane, plastid, vacuole | 55.21 | 63.43 |
| GSMUA_Achr3P22370_001 | Banana | cytosol | 53.23 | 63.0 |
| VIT_15s0021g02350.t01 | Wine grape | nucleus | 10.93 | 62.5 |
| CDX72295 | Canola | cytosol, nucleus, plastid | 54.04 | 60.64 |
| CDY13413 | Canola | nucleus | 53.33 | 60.01 |
| AT4G31160.1 | Thale cress | cytosol, nucleus, plasma membrane | 57.19 | 59.75 |
| CDY36454 | Canola | nucleus | 55.67 | 59.54 |
| CDY23283 | Canola | nucleus | 55.82 | 59.48 |
| TraesCS2B01G630100.1 | Wheat | nucleus | 45.4 | 58.75 |
| Bra024021.1-P | Field mustard | nucleus | 53.53 | 58.5 |
| KRH16085 | Soybean | cytosol | 21.25 | 58.38 |
| Bra010248.1-P | Field mustard | nucleus | 55.77 | 57.59 |
| Os04t0691200-00 | Rice | cytosol | 18.45 | 57.35 |
| HORVU2Hr1G126010.3 | Barley | cytosol | 51.75 | 55.06 |
| EES13157 | Sorghum | cytosol | 53.33 | 54.75 |
| Zm00001d026691_P004 | Maize | cytosol | 52.62 | 54.05 |
| TraesCS2A01G566600.1 | Wheat | nucleus | 52.16 | 53.94 |
| TraesCS2D01G576800.1 | Wheat | cytosol | 51.86 | 53.63 |
| Zm00001d002933_P014 | Maize | cytosol | 51.19 | 52.94 |
| CDY03208 | Canola | nucleus | 3.51 | 35.57 |
Protein Annotations
| EntrezGene:100254299 | Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:ARM-type_fold | ProteinID:CCB46680 | ProteinID:CCB46680.1 |
| UniProt:F6H2W9 | EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001680 |
| InterPro:IPR006594 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:LisH | PFscan:PS50294 | PFscan:PS50896 |
| PANTHER:PTHR13129 | SMART:SM00320 | SMART:SM00667 | SUPFAM:SSF48371 | SUPFAM:SSF50978 | TIGR:TC58008 |
| UniParc:UPI000210A675 | ArrayExpress:VIT_04s0008g03060 | EnsemblPlantsGene:VIT_04s0008g03060 | EnsemblPlants:VIT_04s0008g03060.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_010648467.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:-:2534625..2547915
Molecular Weight (calculated)
214113.0 Da
IEP (calculated)
4.930
GRAVY (calculated)
-0.378
Length
1967 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEAAMDDSQA SAAESQAPPP PSSPPIQEED SGDDDSLQSK VQKLMEKITS SPDNPNPSVL HALSSILETQ ESRYMEETGH SSLNNGRATH IIGRLGSLVR
0101: DNDDFFELIS SKFLSESRYS ISVQAAAARL LLICSLTLVY PHVFEETVVL ENIKNWVMDE NARFSGEDRS WKNDSGRKEA SDSEMLRTYS TGLLALCLAG
0201: GGQVVEDVLT SGLSAKLMRY LRTRVLGETN TSQKDGSHIA ESKNTPGATC MRGRDEGRSR LRLVLETNHL DDPRIIDEGS LHDQSVERDH DRSIGWQTHG
0301: EESRVDGGEP PNSLDEDDMY EVDADGEDRW HGRDLRDLKT KFGDHDENVR DDSKRRANRG LSRLKGKGRV NEGAIENEHA LTSPGSGSRL GQGRSIRDRS
0401: LSRNLDTKRA PDAKKCFGRT IADGFPMERE DNDDRFQECK VGSKDISDLV KKAVKSAEAE AKEANAPLEA IKAAGDAAAE VVKSAALEEF KTTNDEEAAI
0501: LAASKAASTV IDAANAIEVS RSSSNMNADP MNSRGTETEI NEEVEEFFIM DADSLAQLRE KYCIQCLEIL GEYVEVLGPV LHEKGVDVCL ALLQRSSKLK
0601: EASKLAMLLP DVLKLICALA AHRKFAAVFV DRGGMQKLLA VPRVALTFFG LSSCLFTIGS LQGIMERVCA LPSEVVHQVV ELALQLLECS QDQARKNAAL
0701: FFAAAFVFRA VLDSFDAQDG LQKLLSLLHD AASVRSGVNS GGLGLSNSGS LRNDRSPPEV LTSSEKQIAY HTCVALRQYF RAHLLLLVDS IRPNKNNRSA
0801: ARNLPSVRAA YKPLDLSNEA MDAVFLQLQK DRKLGPAFVR ARWLAVDKFL TSNGHITMLE LCQAPPVERY LHDLLQYALG VLHIVTLVPY SRKLIVNVTL
0901: SNNRVGIAVI LDAANGASFV DPEIIQPALN VLVNLVCPPP SISLKPPVLA QGQQSASVQT SNGPAMEARD RNAERNISDR AANMPGQSEL RERNGESGVV
1001: DRGSSAVLSA VSINSTSQTP IPTIASGLVG DRRISLGAGA GCAGLAAQLE QGYRQAREAV RANSGIKVLL HLLQPRIVSP PATLDCLRAL ACRVLLGLAR
1101: DDAIAHILTK LQVGKKLSEL IRDSGSQTSG NEQGRWQAEL AQVAIELIGI VTNSGRASTL AATDAATPTL RRIERAAIAA ATPITYHSRE LLLLIHEHLQ
1201: ASGLSTTAAQ LLKEAQLTPL PSLAAPSSLV HQASSQETPS MQLQWPSGRI AGGFLSNKLK PTTKDEDSCL NSDSSVSSSK KKPLVFSSTL SFQFRNQPQS
1301: HDAQSPAISK VFSTSKKSSA PASVPETPSV TTSKPNLDAE SQYKTPIILP MKRKLTELKD VGLASSVKRL NTSELGLHSP VCSTPNTVRK SNLLNDAIGF
1401: STPCCTPRDQ YGRPTPSSVL TDNLDDNQCG IPHLGQMTPS SFQLGSLNDP HTGNTERLTL DSLVVQYLKH QHRQCPAPIT TLPPLSLLHP HICPEPRRSL
1501: DAPSNVTARL STREFRNVHG GIHGNRRDRQ FIYSRFRPWR TCRDDGNGLL TSLAFLGDSA QIAAGSHSGE LKFFDCNSST MLESFTGHQY PLTLVQSYLS
1601: GDTQLVLSSS SHDVRLWDAS SISGGPRHPF DGCKAARFSN SGTIFAALSS ESSRREILVY DIQTLQLDLK LADTSASSAG RGHVYPLIHF SPSDTMLLWN
1701: GVLWDRRGSG PVHRFDQFTD YGGGGFHPAG NEVIINSEVW DLRKFRLLRT VPSLDQTVIT FNSRGDVIYA ILRRNLEDIM SAVHSRRAKH PLFSAFRTVD
1801: AVNYSDIATI TVDRCVLDFA TEPTDSFVGL VSMDDHDEMF SSARMYEIGR RRPTDDDSDP DDAESEEDDE DEDEDADEDP LLGPALDGDG ESDGDDLSND
1901: DDSLGDFEED DDDDDDGDFV MDDADFDGGG GILELVTEGD EDDNDSEVVE SFSSGDEEDF GDNGFGF
0101: DNDDFFELIS SKFLSESRYS ISVQAAAARL LLICSLTLVY PHVFEETVVL ENIKNWVMDE NARFSGEDRS WKNDSGRKEA SDSEMLRTYS TGLLALCLAG
0201: GGQVVEDVLT SGLSAKLMRY LRTRVLGETN TSQKDGSHIA ESKNTPGATC MRGRDEGRSR LRLVLETNHL DDPRIIDEGS LHDQSVERDH DRSIGWQTHG
0301: EESRVDGGEP PNSLDEDDMY EVDADGEDRW HGRDLRDLKT KFGDHDENVR DDSKRRANRG LSRLKGKGRV NEGAIENEHA LTSPGSGSRL GQGRSIRDRS
0401: LSRNLDTKRA PDAKKCFGRT IADGFPMERE DNDDRFQECK VGSKDISDLV KKAVKSAEAE AKEANAPLEA IKAAGDAAAE VVKSAALEEF KTTNDEEAAI
0501: LAASKAASTV IDAANAIEVS RSSSNMNADP MNSRGTETEI NEEVEEFFIM DADSLAQLRE KYCIQCLEIL GEYVEVLGPV LHEKGVDVCL ALLQRSSKLK
0601: EASKLAMLLP DVLKLICALA AHRKFAAVFV DRGGMQKLLA VPRVALTFFG LSSCLFTIGS LQGIMERVCA LPSEVVHQVV ELALQLLECS QDQARKNAAL
0701: FFAAAFVFRA VLDSFDAQDG LQKLLSLLHD AASVRSGVNS GGLGLSNSGS LRNDRSPPEV LTSSEKQIAY HTCVALRQYF RAHLLLLVDS IRPNKNNRSA
0801: ARNLPSVRAA YKPLDLSNEA MDAVFLQLQK DRKLGPAFVR ARWLAVDKFL TSNGHITMLE LCQAPPVERY LHDLLQYALG VLHIVTLVPY SRKLIVNVTL
0901: SNNRVGIAVI LDAANGASFV DPEIIQPALN VLVNLVCPPP SISLKPPVLA QGQQSASVQT SNGPAMEARD RNAERNISDR AANMPGQSEL RERNGESGVV
1001: DRGSSAVLSA VSINSTSQTP IPTIASGLVG DRRISLGAGA GCAGLAAQLE QGYRQAREAV RANSGIKVLL HLLQPRIVSP PATLDCLRAL ACRVLLGLAR
1101: DDAIAHILTK LQVGKKLSEL IRDSGSQTSG NEQGRWQAEL AQVAIELIGI VTNSGRASTL AATDAATPTL RRIERAAIAA ATPITYHSRE LLLLIHEHLQ
1201: ASGLSTTAAQ LLKEAQLTPL PSLAAPSSLV HQASSQETPS MQLQWPSGRI AGGFLSNKLK PTTKDEDSCL NSDSSVSSSK KKPLVFSSTL SFQFRNQPQS
1301: HDAQSPAISK VFSTSKKSSA PASVPETPSV TTSKPNLDAE SQYKTPIILP MKRKLTELKD VGLASSVKRL NTSELGLHSP VCSTPNTVRK SNLLNDAIGF
1401: STPCCTPRDQ YGRPTPSSVL TDNLDDNQCG IPHLGQMTPS SFQLGSLNDP HTGNTERLTL DSLVVQYLKH QHRQCPAPIT TLPPLSLLHP HICPEPRRSL
1501: DAPSNVTARL STREFRNVHG GIHGNRRDRQ FIYSRFRPWR TCRDDGNGLL TSLAFLGDSA QIAAGSHSGE LKFFDCNSST MLESFTGHQY PLTLVQSYLS
1601: GDTQLVLSSS SHDVRLWDAS SISGGPRHPF DGCKAARFSN SGTIFAALSS ESSRREILVY DIQTLQLDLK LADTSASSAG RGHVYPLIHF SPSDTMLLWN
1701: GVLWDRRGSG PVHRFDQFTD YGGGGFHPAG NEVIINSEVW DLRKFRLLRT VPSLDQTVIT FNSRGDVIYA ILRRNLEDIM SAVHSRRAKH PLFSAFRTVD
1801: AVNYSDIATI TVDRCVLDFA TEPTDSFVGL VSMDDHDEMF SSARMYEIGR RRPTDDDSDP DDAESEEDDE DEDEDADEDP LLGPALDGDG ESDGDDLSND
1901: DDSLGDFEED DDDDDDGDFV MDDADFDGGG GILELVTEGD EDDNDSEVVE SFSSGDEEDF GDNGFGF
0001: MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
Arabidopsis Description
DCAF1DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M086]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.