Factsheet for VIT_10s0003g03710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g03060.t01
VIT_05s0077g02310.t01
VIT_06s0004g00730.t01
VIT_06s0004g06550.t01
VIT_10s0003g04360.t01
VIT_12s0035g01450.t01
VIT_12s0035g01840.t01
VIT_12s0055g00390.t01
VIT_12s0059g01420.t01
VIT_14s0171g00270.t01
VIT_15s0021g02350.t01
VIT_18s0001g09100.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	VIT_18s0001g09100.t01	AT1G19750.1	20622147
AT5G46210.1	VIT_03s0038g04360.t01	AT1G71230.1	16844902
AT5G46210.1	VIT_12s0035g01840.t01	AT2G02560.1	16844902
AT5G46210.1	VIT_12s0059g01420.t01	AT2G32950.1	16844902
AT5G46210.1	VIT_06s0004g00730.t01	AT3G13550.1	16844902
AT5G46210.1	VIT_10s0003g04360.t01	AT4G05420.1	16792691
AT5G46210.1	VIT_10s0003g04360.t01	AT4G05420.1	16844902
AT5G46210.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036
AT5G46210.1	VIT_10s0003g04360.t01	AT4G05420.1	18551167
AT5G46210.1	VIT_12s0055g00390.t01	AT4G14110.1	16844902
AT5G46210.1	VIT_05s0077g02310.t01	AT4G15900.1	18223036
AT5G46210.1	VIT_10s0003g04360.t01	AT4G21100.1	16792691
AT5G46210.1	VIT_04s0008g03060.t01	AT4G31160.1	18552200
AT5G46210.1	VIT_15s0021g02350.t01	AT4G31160.1	18552200
AT5G46210.1	VIT_14s0171g00270.t01	AT5G14250.1	16844902
AT5G46210.1	VIT_12s0035g01450.t01	AT5G42970.1	16844902
AT5G46210.1	VIT_18s0001g12250.t01	AT5G42970.1	16844902
AT5G46210.1	VIT_06s0004g06550.t01	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	34.91	97.9
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	89.03	90.96
KRH11182	Soybean	cytosol, plastid	89.03	90.61
KRH58640	Soybean	cytosol	85.29	88.26
KRH42547	Soybean	cytosol	83.79	87.39
CDY33461	Canola	cytosol	81.05	85.41
GSMUA_Achr4P22850_001	Banana	cytosol	85.41	85.31
KRH21072	Soybean	plastid	51.37	85.3
Bra025031.1-P	Field mustard	cytosol	80.8	85.26
CDX77644	Canola	cytosol	80.92	84.62
TraesCS5A01G425300.1	Wheat	cytosol	74.31	83.83
CDY43957	Canola	cytosol	80.92	83.63
Solyc02g070460.2.1	Tomato	plastid	83.54	83.54
CDX87735	Canola	cytosol	80.67	82.95
Bra022023.1-P	Field mustard	plastid	81.05	82.8
CDY03235	Canola	plastid	80.67	81.9
CDY35152	Canola	plastid	80.17	81.81
Bra017569.1-P	Field mustard	plastid	80.05	81.68
AT5G46210.1	Thale cress	cytosol	80.05	81.06
TraesCS5B01G427400.1	Wheat	cytosol	78.55	78.46
GSMUA_Achr7P01270_001	Banana	cytosol	84.29	77.26
EER93338	Sorghum	plastid	79.93	76.86
Zm00001d034361_P001	Maize	cytosol, plastid	79.43	76.56
TraesCS5D01G433700.3	Wheat	cytosol, plastid	78.55	75.9
HORVU5Hr1G103580.2	Barley	plastid	78.68	75.75
Zm00001d013116_P002	Maize	plastid	79.68	74.3
VIT_01s0026g02230.t01	Wine grape	cytosol	37.28	40.79
VIT_14s0108g00490.t01	Wine grape	cytosol	36.66	37.5
VIT_07s0104g01590.t01	Wine grape	cytosol	30.05	32.52
VIT_05s0020g01320.t01	Wine grape	cytosol	29.93	32.26
VIT_05s0020g01340.t01	Wine grape	mitochondrion	3.37	16.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100233055	wikigene:100233055	MapMan:19.2.2.8.3.1
MapMan:26.1.1.3.1	ProteinID:ACA52121	ProteinID:ACA52121.1	EMBL:AM432295	ProteinID:CAN75926	ProteinID:CAN75926.1
ProteinID:CBI30911	ProteinID:CBI30911.3	EntrezGene:CUL4	wikigene:CUL4	InterPro:Cullin_CS	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	UniProt:D7TK89	EMBL:EU489518
EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	GO:GO:0080008	InterPro:IPR016158	InterPro:IPR036388
PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	TIGR:TC58470
UniParc:UPI00015CAD2C	ArrayExpress:VIT_10s0003g03710	EnsemblPlantsGene:VIT_10s0003g03710	EnsemblPlants:VIT_10s0003g03710.t01	unigene:Vvi.10220	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002270764	RefSeq:XP_002270764.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:6283834..6321221

Molecular Weight (calculated)

92031.4 Da

IEP (calculated)

7.523

GRAVY (calculated)

-0.409

Length

802 amino acids

Sequence
(BLAST)

001: MKKAKSQAVA CSLDPKNGLQ PPPHPPPPSS HHFPDDDFDP SAMALDDDLK PDDADAAACS RPSAGGVTAN LSRKKATPPQ PAKKQLVIKL LKAKPTLPTN
101: FEEDTWAKLK SAISAIFLKQ PDPCDLEKLY QAVNDLCLHK MGGNLYQRIE KECESHIRAA LQSLVGQSPD LVVFLSLVEK CWQDLCDQML MIRGIALYLD
201: RTYVKQTPNV RSLWDMGLQL FRKHLSLSPE VEHKTVTGLL RMIERERLGE AVDRTLLNHL LKMFTALGIY LESFEKPFLE CTSEFYAAEG MKYMQQSDVP
301: DYLKHVEIRL HEEHERCLLY LDASTRKPLV ATAERQLLER HISAILDKGF MMLMDGNRIE DLQRMYLLFS RVNALESLRQ ALSSYIRRTG QGIVMDEEKD
401: KDMVSCLLEF KASLDTIWEE SFSRNEAFCN TIKDAFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LEGTLDKVLV LFRFIQGKDV FEAFYKKDLA
501: KRLLLGKSAS IDAEKSMITK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PTGIEMSVHV LTTGYWPTYP PMDVRLPHEL NVYQDIFKEF
601: YLSKYSGRRL MWQNSLGHCV LKAEFPKGKK ELAVSLFQTV VLMLFNDAQK LSFQDIKDST GIEDKELRRT LQSLACGKVR VLQKLPKGRE VEDDDSFMFN
701: EGFTAPLYRI KVNAIQMKET VEENTSTTER VFQDRQYQVD AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER DKNNPQIYNY
801: LA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.